RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 AGAP11Q8TF27 550 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 MTFMTQ96DP5 389 aaKnown RBP14.29□□□□□ -0.12
NUP54-213ENST00000513352 CLIP3Q96DZ5 547 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 MAGEB10Q96LZ2 347 aaPredicted RBP14.29□□□□□ -0.12
NUP54-213ENST00000513352 TEFMQ96QE5 360 aaKnown RBP14.29□□□□□ -0.12
NUP54-213ENST00000513352 ZPBPQ9BS86 351 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 NDC1Q9BTX1 674 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 TRMOQ9BU70 441 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 SYNPO2LQ9H987 977 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 EML4Q9HC35 981 aaKnown RBP14.29□□□□□ -0.12
NUP54-213ENST00000513352 INTS9Q9NV88 658 aaKnown RBP14.29□□□□□ -0.12
NUP54-213ENST00000513352 WDR70Q9NW82 654 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 NDOR1Q9UHB4 597 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 TRPS1Q9UHF7 1281 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 ZFP69BQ9UJL9 534 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 ANGPTL2Q9UKU9 493 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 WASF3Q9UPY6 502 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 MSRB2Q9Y3D2 182 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 FIS1Q9Y3D6 152 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 PCDHGA11Q9Y5H2 935 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 AP1M2Q9Y6Q5 423 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 KCNE1BA0A087WTH5 132 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 A0A1B0GTL3 188 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 MED19A0JLT2 244 aaPredicted RBP14.28□□□□□ -0.12
NUP54-213ENST00000513352 C9orf172C9J069 976 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 TXNDC9O14530 226 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 ZNF749O43361 778 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 KIAA0754O94854 1291 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 TIAF1O95411 115 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 ESRRBO95718 433 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 HSPA4LO95757 839 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 NTRK1P04629 796 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 CHRNGP07510 517 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 SLC5A2P31639 672 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 AHRP35869 848 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 PCDH1Q08174 1060 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 STX3Q13277 289 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 ARL13AQ5H913 290 aaPredicted RBP14.28□□□□□ -0.12
NUP54-213ENST00000513352 TOR1AIP1Q5JTV8 583 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 FAM219BQ5XKK7 198 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 ADNP2Q6IQ32 1131 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 VN1R4Q7Z5H5 301 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 TRIM42Q8IWZ5 723 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 LSMEM2Q8N112 164 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 TRPV3Q8NET8 790 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 OR7G3Q8NG95 312 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 SLC46A1Q96NT5 459 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 ELOVL6Q9H5J4 265 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 NT5DC2Q9H857 520 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 ACTR5Q9H9F9 607 aaPredicted RBP14.28□□□□□ -0.12
NUP54-213ENST00000513352 THSD1Q9NS62 852 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 TXLNGQ9NUQ3 528 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 FOXJ2Q9P0K8 574 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 ZNF490Q9ULM2 529 aaPredicted RBP14.28□□□□□ -0.12
NUP54-213ENST00000513352 SNX6Q9UNH7 406 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 SRPK3Q9UPE1 567 aa14.28□□□□□ -0.12
NUP54-213ENST00000513352 RUVBL1Q9Y265 456 aaKnown RBP14.28□□□□□ -0.12
NUP54-213ENST00000513352 HYKKA2RU49 373 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 TMEM114B3SHH9 223 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 UBFD1O14562 309 aaKnown RBP14.27□□□□□ -0.13
NUP54-213ENST00000513352 CPNE3O75131 537 aaKnown RBP14.27□□□□□ -0.13
NUP54-213ENST00000513352 SH3BGRLO75368 114 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 LYPLA1O75608 230 aaPredicted RBP14.27□□□□□ -0.13
NUP54-213ENST00000513352 STK17BO94768 372 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 ENO1P06733 434 aaKnown RBP14.27□□□□□ -0.13
NUP54-213ENST00000513352 CAPN1P07384 714 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 ZNF28P17035 718 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 ALAS2P22557 587 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 GRK2P25098 689 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 GSTM2P28161 218 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 ABCE1P61221 599 aaKnown RBP14.27□□□□□ -0.13
NUP54-213ENST00000513352 RTP5Q14D33 572 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 NDUFA9Q16795 377 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 GGTA1PQ4G0N0 100 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 C1orf189Q5VU69 101 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 ERMP1Q7Z2K6 904 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 CUZD1Q86UP6 607 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 RNF175Q8N4F7 328 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 METTL6Q8TCB7 284 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 KCNA7Q96RP8 456 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 MTERF1Q99551 399 aaKnown RBP14.27□□□□□ -0.13
NUP54-213ENST00000513352 SARGQ9BW04 601 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 SLC29A3Q9BZD2 475 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 CUTCQ9NTM9 273 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 DHCR7Q9UBM7 475 aaKnown RBP14.27□□□□□ -0.13
NUP54-213ENST00000513352 ZNF225Q9UK10 706 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 TIMM22Q9Y584 194 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 SCN3AQ9NY46 2000 aa14.27□□□□□ -0.13
NUP54-213ENST00000513352 URADA6NGE7 173 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 H0YIV9 168 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 TGFB1P01137 390 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 KRT6AP02538 564 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 KRT6BP04259 564 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 HBQ1P09105 142 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 SERPINB1P30740 379 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 SERPINB5P36952 375 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 SLC1A6P48664 564 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 KRT6CP48668 564 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 NEK2P51955 445 aa14.26□□□□□ -0.13
NUP54-213ENST00000513352 ARSFP54793 590 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms