RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CYB561P49447 251 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SCN1BQ07699 218 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 ABRAXAS2Q15018 415 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 GCNT6Q5T4J0 391 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SYVN1Q86TM6 617 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 VASH2Q86V25 355 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 TTC9BQ8N6N2 239 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 DCUN1D5Q9BTE7 237 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 PARD6BQ9BYG5 372 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 TM9SF3Q9HD45 589 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 DNAJB11Q9UBS4 358 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 ATP23Q9Y6H3 246 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 KIAA0100Q14667 2235 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 GGT3PA6NGU5 568 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 EIF1AYO14602 144 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 RNF13O43567 381 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 MFN2O95140 757 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 RASAL1O95294 804 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 POU2F2P09086 479 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 TSPAN19P0C672 248 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 DDCP20711 480 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 CFL1P23528 166 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 NR0B1P51843 470 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 CTBSQ01459 385 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 MELKQ14680 651 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 MOGQ16653 247 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 KCTD19Q17RG1 926 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 HTR3DQ70Z44 454 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 MCATQ8IVS2 390 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 PRELID2Q8N945 189 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 OR11L1Q8NGX0 322 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 PNPT1Q8TCS8 783 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 FBXW5Q969U6 566 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 PYCR2Q96C36 320 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF559Q9BR84 538 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 DIABLOQ9NR28 239 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 GIN1Q9NXP7 522 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 ADAM30Q9UKF2 790 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 FZD4Q9ULV1 537 aa8.9□□□□□ -0.99
LIMCH1-202ENST00000381753 DNALI1O14645 258 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PSIP1O75475 530 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ACTL6BO94805 426 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 SOX4Q06945 474 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PPIDQ08752 370 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 TSNQ15631 228 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PRMT9Q6P2P2 845 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 TTC33Q6PID6 262 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 THOC6Q86W42 341 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 NRROSQ86YC3 692 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 OR13C4Q8NGS5 318 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 IGSF8Q969P0 613 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 SARAFQ96BY9 339 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 LRRC58Q96CX6 371 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ACTRT3Q9BYD9 372 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 CUTCQ9NTM9 273 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ZCCHC3Q9NUD5 404 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PCDH7O60245 1069 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 IL1RNP18510 177 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 SFTPDP35247 375 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 GUCY1A3Q02108 690 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PMS2P3Q13401 168 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ATP1A4Q13733 1029 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ZMYND11Q15326 602 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 LRIG3Q6UXM1 1119 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 TMIGD1Q6UXZ0 262 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF610Q8N9Z0 462 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 BORCS6Q96GS4 357 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 CNBD2Q96M20 576 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 LRRC1Q9BTT6 524 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PCDHB14Q9Y5E9 798 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 SNX11Q9Y5W9 270 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 HS3ST3A1Q9Y663 406 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 A1L4Q6 167 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PRAMEF11O60813 436 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 WNT11O96014 354 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 CSF2P04141 144 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 KLK1P06870 262 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 HSD11B2P80365 405 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 SMAD2Q15796 467 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 Q6ZS52 159 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 GALNT12Q8IXK2 581 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 MICU2Q8IYU8 434 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 FTMTQ8N4E7 242 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 OR13H1Q8NG92 308 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 C1orf216Q8TAB5 229 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 KAT2AQ92830 837 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 TWNKQ96RR1 684 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 DEFB127Q9H1M4 99 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 OR51B6Q9H340 312 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ERVK-18Q9QC07 812 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 MTO1Q9Y2Z2 717 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PCDHGA5Q9Y5G8 931 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 GLI3P10071 1580 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 LTN1O94822 1766 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 HSPA12AO43301 675 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 KCNK5O95279 499 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ACADLP28330 430 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 OMPP47874 163 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 IFI35P80217 286 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms