RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 DEFA3P59666 94 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 AP1S1P61966 158 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 TXNL4AP83876 142 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 EMX2Q04743 252 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 RING1Q06587 406 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 COQ5Q5HYK3 327 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 ADGRF1Q5T601 910 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 LCN8Q6JVE9 175 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SSX9Q7RTT3 188 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 NECAB2Q7Z6G3 386 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 DEFB128Q7Z7B8 93 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 OR13J1Q8NGT2 312 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 RAB2BQ8WUD1 216 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 METTL21AQ8WXB1 218 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 TMBIM1Q969X1 311 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 UBXN10Q96LJ8 280 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 PRDM5Q9NQX1 630 aaPredicted RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 AIG1Q9NVV5 245 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SAMHD1Q9Y3Z3 626 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 DGKBQ9Y6T7 804 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 GON4LQ3T8J9 2241 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 TCRBV3S1A0A5B6 114 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 WASH4PA8MWX3 477 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 ACOT8O14734 319 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 ADAM11O75078 769 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 MATN4O95460 622 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 RAB3DO95716 219 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SLC6A2P23975 617 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 CSTF2P33240 577 aaKnown RBP eCLIP10.13□□□□□ -0.79
LIG1-220ENST00000601091 INPP1P49441 399 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 GPR17Q13304 367 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 UBE2R2Q712K3 238 aaPredicted RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 PRSS58Q8IYP2 241 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 C2orf15Q8WU43 125 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 SLC5A11Q8WWX8 675 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 PLD4Q96BZ4 506 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 NODALQ96S42 347 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 ANKRD60Q9BZ19 345 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 GKN1Q9NS71 199 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SMOXQ9NWM0 555 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 C1orf109Q9NX04 203 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 C7orf72A4D263 438 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 ACOD1A6NK06 481 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 HHLA1C9JL84 531 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 F8W036 122 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 SH3BGRLO75368 114 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 FTH1P02794 183 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 ITGB1P05556 798 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 LCKP06239 509 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 PRKAR1AP10644 381 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 ELNP15502 786 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 CD79BP40259 229 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 KIR3DL1P43629 444 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 GRM7Q14831 915 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 SPDYE7PQ495Y7 208 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 ATAD3BQ5T9A4 648 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 DET1Q7L5Y6 550 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 DDX53Q86TM3 631 aaKnown RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 SYVN1Q86TM6 617 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 STX19Q8N4C7 294 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 GALNT11Q8NCW6 608 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 OR4F6Q8NGB9 312 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 APOLD1Q96LR9 279 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 DIMT1Q9UNQ2 313 aaKnown RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 FCF1Q9Y324 198 aaKnown RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 COL4A5P29400 1685 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 A0A1B0GWJ7 208 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 I3L521 148 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 LDB2O43679 373 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 GATCO43716 136 aaKnown RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 KDELR3O43731 214 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 CLN5O75503 358 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 RASAL1O95294 804 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 QDPRP09417 244 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 RFC2P35250 354 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 FNTBP49356 437 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 HMGCS1Q01581 520 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 PPP1R8Q12972 351 aaKnown RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 FIBCD1Q8N539 461 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 PDPRQ8NCN5 879 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 FBXO22Q8NEZ5 403 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 GRPEL2Q8TAA5 225 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 CCDC74BQ96LY2 380 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 C3orf30Q96M34 536 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 OPALINQ96PE5 141 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 ZNF382Q96SR6 550 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 ZSCAN32Q9NX65 697 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 IQCF5A8MTL0 148 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 FAM155AB1AL88 458 aaPredicted RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 BCKDKO14874 412 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 AP1G1O43747 822 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 NOBOXO60393 691 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 UGT2B11O75310 529 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 RSL1D1O76021 490 aaKnown RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 NADKO95544 446 aaPredicted RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 CATP04040 527 aaKnown RBP10.12□□□□□ -0.79
LIG1-220ENST00000601091 FABP1P07148 127 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 IGFBP5P24593 272 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 HTR1EP28566 365 aa10.12□□□□□ -0.79
LIG1-220ENST00000601091 CHI3L1P36222 383 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms