RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 FKBP1BP68106 108 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 CETN1Q12798 172 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 ILF3Q12906 894 aaKnown RBP eCLIP6.67□□□□□ -1.34
NUP54-215ENST00000514313 GPR17Q13304 367 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 TRA2AQ13595 282 aaKnown RBP eCLIP6.67□□□□□ -1.34
NUP54-215ENST00000514313 UGT3A1Q6NUS8 523 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 PRUNE1Q86TP1 453 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 CCDC60Q8IWA6 550 aaPredicted RBP6.67□□□□□ -1.34
NUP54-215ENST00000514313 CIARTQ8N365 385 aaPredicted RBP6.67□□□□□ -1.34
NUP54-215ENST00000514313 POC1AQ8NBT0 407 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 DMBX1Q8NFW5 382 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 OR13C3Q8NGS6 347 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 SCARB1Q8WTV0 552 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 PIK3R3Q92569 461 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 ZNF354BQ96LW1 612 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 ZNF560Q96MR9 790 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 MTMR12Q9C0I1 747 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 NAPBQ9H115 298 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 C1orf21Q9H246 121 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 C5orf66Q9H5L9 145 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 C10orf88Q9H8K7 445 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 MAGEF1Q9HAY2 307 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 SYTL2Q9HCH5 934 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 NINJ2Q9NZG7 142 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 IL16Q14005 1332 aa6.67□□□□□ -1.34
NUP54-215ENST00000514313 MAGEB16A2A368 324 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 ANTXRLA6NF34 631 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 PRPSAP2O60256 369 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 NTN1O95631 604 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 AHCYP23526 432 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 MARK3P27448 753 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 DCTP40126 519 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 CETN2P41208 172 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 SLC34A1Q06495 639 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 ABRQ12979 859 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 PDE7AQ13946 482 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 PDK1Q15118 436 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 ZNF542PQ5EBM4 170 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 CCNYL2Q5T2Q4 361 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 C20orf194Q5TEA3 1177 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 C1orf186Q6ZWK4 172 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 CATSPER4Q7RTX7 472 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 CPEB2Q7Z5Q1 589 aaKnown RBP6.66□□□□□ -1.34
NUP54-215ENST00000514313 LAX1Q8IWV1 398 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 RCOR2Q8IZ40 523 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 PRSS35Q8N3Z0 413 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 HDDC3Q8N4P3 179 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 MAB21L3Q8N8X9 362 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 OR52E1Q8NGJ3 308 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 LMO3Q8TAP4 145 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 CD101Q93033 1021 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 TSPYL1Q9H0U9 437 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 OR6C2Q9NZP2 312 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 FOXA2Q9Y261 457 aaPredicted RBP6.66□□□□□ -1.34
NUP54-215ENST00000514313 ZNF510Q9Y2H8 683 aa6.66□□□□□ -1.34
NUP54-215ENST00000514313 RNF103-CHMP3A0A140T963 221 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 RNF103O00237 685 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 REC8O95072 547 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 CXCL14O95715 111 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 ATP1B1P05026 303 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 UGT1A6P19224 532 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 ELAVL4P26378 380 aaKnown RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 SRD5A2P31213 254 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 RABIFP47224 123 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 RPP38P78345 283 aaKnown RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 GALK2Q01415 458 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 LCP2Q13094 533 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 RBM39Q14498 530 aaKnown RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 ZC2HC1CQ53FD0 456 aaPredicted RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 WDR38Q5JTN6 314 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 METTL21AQ8WXB1 218 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 PRCCQ92733 491 aaPredicted RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 ZBTB9Q96C00 473 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 CFAP36Q96G28 342 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 LYZL4Q96KX0 146 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 BTBD9Q96Q07 612 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 HIPK2Q9H2X6 1198 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 BICC1Q9H694 974 aaKnown RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 PIN4Q9Y237 131 aaKnown RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 TMED7Q9Y3B3 224 aa6.65□□□□□ -1.34
NUP54-215ENST00000514313 STRAPQ9Y3F4 350 aaKnown RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 MTF2Q9Y483 593 aaPredicted RBP6.65□□□□□ -1.34
NUP54-215ENST00000514313 DHX29Q7Z478 1369 aaKnown RBP6.65□□□□□ -1.35
NUP54-215ENST00000514313 TLR4O00206 839 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 LETM1O95202 739 aaPredicted RBP6.64□□□□□ -1.35
NUP54-215ENST00000514313 T-ENOLP0DO92 83 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 CPA3P15088 417 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 IL10P22301 178 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 TTC31Q49AM3 519 aaPredicted RBP6.64□□□□□ -1.35
NUP54-215ENST00000514313 ARMCX4Q5H9R4 360 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 ZNF324BQ6AW86 544 aaPredicted RBP6.64□□□□□ -1.35
NUP54-215ENST00000514313 OR4C11Q6IEV9 310 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 C9orf139Q6ZV77 190 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 ERC1Q8IUD2 1116 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 MRPL43Q8N983 215 aaKnown RBP6.64□□□□□ -1.35
NUP54-215ENST00000514313 OR4C15Q8NGM1 316 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 GGHQ92820 318 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 TMEM143Q96AN5 459 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 LGALS12Q96DT0 336 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 THOC3Q96J01 351 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms