RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 THEMIS2Q5TEJ8 643 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 AGAP7PQ5VUJ5 663 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 CPNE9Q8IYJ1 553 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 PDIK1LQ8N165 341 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 METTL27Q8N6F8 245 aaPredicted RBP18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 CCDC138Q96M89 665 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 AGAP4Q96P64 663 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 TMEM184CQ9NVA4 438 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 RUVBL1Q9Y265 456 aaKnown RBP18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 HIVEP3Q5T1R4 2406 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 MED26O95402 600 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 CCND1P24385 295 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 IMPA1P29218 277 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 KLC1Q07866 573 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 SRSF1Q07955 248 aaKnown RBP eCLIP18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 FAM53BQ14153 422 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 NDUFA9Q16795 377 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 FHL5Q5TD97 284 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 PIWIL4Q7Z3Z4 852 aaKnown RBP18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 PPFIBP2Q8ND30 876 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 OR11G2Q8NGC1 345 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 LRRC39Q96DD0 335 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 THAP11Q96EK4 314 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 LHPPQ9H008 270 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 KCNF1Q9H3M0 494 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 PARVBQ9HBI1 364 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 CCDC177Q9NQR7 707 aaPredicted RBP18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 C14orf105Q9NVL8 296 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 C3orf18Q9UK00 162 aa18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 CORO1CQ9ULV4 474 aaPredicted RBP18.16■□□□□ 0.5
CCDC28A-203ENST00000617445 SPENQ96T58 3664 aaKnown RBP18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 KCNE1BA0A087WTH5 132 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 HPP00738 406 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 F7P08709 466 aaPredicted RBP18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 ANXA5P08758 320 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 ACPPP15309 386 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 GNLYP22749 145 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 IVDP26440 423 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 SLC26A3P40879 764 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 ATG9BQ674R7 924 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 IGFL2Q6UWQ7 119 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 Q6ZS92 163 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 SHISA6Q6ZSJ9 500 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 ADCK2Q7Z695 626 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 TMEM151BQ8IW70 566 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 MYO1HQ8N1T3 1032 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 EEF1AKMT1Q8WVE0 214 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 ANP32BQ92688 251 aaKnown RBP18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 CERS2Q96G23 380 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 FAM129AQ9BZQ8 928 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 TGIF2Q9GZN2 237 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 DRC3Q9H069 523 aa18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 ILKAPQ9H0C8 392 aaPredicted RBP18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 MKKSQ9NPJ1 570 aaPredicted RBP18.15■□□□□ 0.5
CCDC28A-203ENST00000617445 H7BY64 318 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 MAP2K7O14733 419 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 AHSGP02765 367 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 HIST1H2AGP0C0S8 130 aaPredicted RBP18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 HIST1H2ADP20671 130 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 RPS15AP62244 130 aaKnown RBP18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 TIAL1Q01085 375 aaKnown RBP eCLIP18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 HKDC1Q2TB90 917 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 BBS9Q3SYG4 887 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 MSS51Q4VC12 460 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 ARHGEF39Q8N4T4 335 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 DTWD1Q8N5C7 304 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 PPP4R1Q8TF05 950 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 HIST1H2AHQ96KK5 128 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 PRAP1Q96NZ9 151 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 HIST1H2AJQ99878 128 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 H2AFJQ9BTM1 129 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 STOX2Q9P2F5 926 aaPredicted RBP18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 TRPC4Q9UBN4 977 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 PDE10AQ9Y233 779 aa18.14■□□□□ 0.49
CCDC28A-203ENST00000617445 ICE1Q9Y2F5 2266 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 A0A1W2PQ72 361 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 CCDC188H7C350 402 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 HAT1O14929 419 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 FDXRP22570 491 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 CXCR2P25025 360 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 GABRB3P28472 473 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 UQCRFS1P47985 274 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 EMP2P54851 167 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 IL2P60568 153 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 DR1Q01658 176 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 FRG1Q14331 258 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 VWA2Q5GFL6 755 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 TEDDM1Q5T9Z0 273 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 PAQR3Q6TCH7 311 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 NDUFAF7Q7L592 441 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 SNRNP40Q96DI7 357 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 MMABQ96EY8 250 aaPredicted RBP18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 LMF1Q96S06 567 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 NDNQ99608 321 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 WDR77Q9BQA1 342 aaPredicted RBP18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 YIPF2Q9BWQ6 316 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 TRIM54Q9BYV2 358 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 EPS8L2Q9H6S3 715 aa18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 PPANQ9NQ55 473 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-203ENST00000617445 ABCF3Q9NUQ8 709 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms