RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ANKRD61A6NGH8 418 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 C17orf105B2RV13 164 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 C19orf81C9J6K1 198 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 BCAS2O75934 225 aaPredicted RBP6.78□□□□□ -1.32
NUP54-215ENST00000514313 BAG3O95817 575 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 SERPINH1P50454 418 aaKnown RBP6.78□□□□□ -1.32
NUP54-215ENST00000514313 SLC12A3P55017 1021 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 CACNG1Q06432 222 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 SULT2A1Q06520 285 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 GAGE5Q13069 117 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 GAGE6Q13070 117 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 PDSS1Q5T2R2 415 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.78□□□□□ -1.32
NUP54-215ENST00000514313 RABEPKQ7Z6M1 372 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 ANKRD46Q86W74 232 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 KLHDC1Q8N7A1 406 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 MAPKAPK5-AS1Q8N8E1 139 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 KBTBD3Q8NAB2 608 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 PHLDA1Q8WV24 401 aaPredicted RBP6.78□□□□□ -1.32
NUP54-215ENST00000514313 CKAP2Q8WWK9 683 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 SMG7Q92540 1137 aaKnown RBP6.78□□□□□ -1.32
NUP54-215ENST00000514313 TSACCQ96A04 125 aaPredicted RBP6.78□□□□□ -1.32
NUP54-215ENST00000514313 ZNF583Q96ND8 569 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 GAL3ST4Q96RP7 486 aa6.78□□□□□ -1.32
NUP54-215ENST00000514313 SDR39U1Q9NRG7 319 aaPredicted RBP6.78□□□□□ -1.32
NUP54-215ENST00000514313 FAM207AQ9NSI2 230 aaPredicted RBP6.78□□□□□ -1.32
NUP54-215ENST00000514313 A0A1W2PN81 502 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 PRAC2D3DTV9 90 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 ATP9AO75110 1047 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 PAPSS2O95340 614 aaPredicted RBP6.77□□□□□ -1.33
NUP54-215ENST00000514313 IGKV2-30P06310 120 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 NR1D1P20393 614 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 CYP2A7P20853 494 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 CHRNA7P36544 502 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 FMO5P49326 533 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 ZNF132P52740 706 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 AKAP17AQ02040 695 aaKnown RBP6.77□□□□□ -1.33
NUP54-215ENST00000514313 IL10RBQ08334 325 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 ZNF770Q6IQ21 691 aaPredicted RBP6.77□□□□□ -1.33
NUP54-215ENST00000514313 CROCCP3Q8IVE0 287 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 KLHDC8AQ8IYD2 350 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 EID3Q8N140 333 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 CCDC63Q8NA47 563 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 OR52N5Q8NH56 324 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 LRRC8CQ8TDW0 803 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 SLC26A7Q8TE54 656 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 CDKN2AIPNLQ96HQ2 116 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 MED30Q96HR3 178 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 NDNQ99608 321 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 MAP3K3Q99759 626 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 PANK2Q9BZ23 570 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 TNMDQ9H2S6 317 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 ISY1Q9ULR0 285 aaKnown RBP6.77□□□□□ -1.33
NUP54-215ENST00000514313 RIPK3Q9Y572 518 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 CACNA1IQ9P0X4 2223 aa6.77□□□□□ -1.33
NUP54-215ENST00000514313 A0A0B4J203 849 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 LOC101059948A0A1B0GTJ6 334 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 PLSCR5A0PG75 271 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 C2orf81A6NN90 581 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 TMEM150CB9EJG8 249 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 RAD51DO75771 328 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 PIGNO95427 931 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 ALPLP05186 524 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 DLATP10515 647 aaKnown RBP6.76□□□□□ -1.33
NUP54-215ENST00000514313 PLA2G2AP14555 144 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 SSTR1P30872 391 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 UCP2P55851 309 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 ARHGAP1Q07960 439 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 LRRC38Q5VT99 294 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 ETFRF1Q6IPR1 90 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 SERPINA12Q8IW75 414 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 IGSF21Q96ID5 467 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 EPSTI1Q96J88 318 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 RASL10BQ96S79 203 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 PSD2Q9BQI7 771 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 KRTAP4-5Q9BYR2 181 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 ACPTQ9BZG2 426 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 ZBTB20Q9HC78 741 aaPredicted RBP6.76□□□□□ -1.33
NUP54-215ENST00000514313 FGF21Q9NSA1 209 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 IL19Q9UHD0 177 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 TEX264Q9Y6I9 313 aa6.76□□□□□ -1.33
NUP54-215ENST00000514313 SPAG9O60271 1321 aaKnown RBP6.76□□□□□ -1.33
NUP54-215ENST00000514313 A0A1W2PS18 150 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 PRKRAO75569 313 aaKnown RBP6.75□□□□□ -1.33
NUP54-215ENST00000514313 NR3C1P04150 777 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 SP9P0CG40 484 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 TYMPP19971 482 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 HOXA1P49639 335 aaPredicted RBP6.75□□□□□ -1.33
NUP54-215ENST00000514313 ART1P52961 327 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 STARD6P59095 220 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 IL1RL1Q01638 556 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 XKR3Q5GH77 459 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 CAPRIN2Q6IMN6 1127 aaKnown RBP6.75□□□□□ -1.33
NUP54-215ENST00000514313 PRSS42Q7Z5A4 293 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 ZNF843Q8N446 348 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 SPXQ9BT56 116 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 RIMS4Q9H426 269 aaPredicted RBP6.75□□□□□ -1.33
NUP54-215ENST00000514313 DDX31Q9H8H2 851 aaKnown RBP6.75□□□□□ -1.33
NUP54-215ENST00000514313 ANO10Q9NW15 660 aa6.75□□□□□ -1.33
NUP54-215ENST00000514313 TRIP12Q14669 1992 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms