RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C20orf96Q9NUD7 363 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 GALPQ9UBC7 116 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 SNX12Q9UMY4 172 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 DHRS7Q9Y394 339 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 ESPL1Q14674 2120 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 MDC1Q14676 2089 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 HYKKA2RU49 373 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 CLEC18AA5D8T8 446 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 VPS4BO75351 444 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 VPS26AO75436 327 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 SORBS2O94875 1100 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 PSMB5P28074 263 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 PNLIPRP1P54315 467 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 FASTKQ14296 549 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 PPP1R7Q15435 360 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 KCTD19Q17RG1 926 aaPredicted RBP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 CLEC18BQ6UXF7 455 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 DENND6AQ8IWF6 608 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 CLEC18CQ8NCF0 446 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 ASB11Q8WXH4 323 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 PNPLA2Q96AD5 504 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 ZFYVE21Q9BQ24 234 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 TRIM56Q9BRZ2 755 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 NAT9Q9BTE0 207 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 DPH7Q9BTV6 452 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 MRPS30Q9NP92 439 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 SLAMF7Q9NQ25 335 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 FBXO5Q9UKT4 447 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 VPS4AQ9UN37 437 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 NUP210LQ5VU65 1888 aa18.24■□□□□ 0.51
CCDC28A-203ENST00000617445 DOCK10Q96BY6 2186 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 A0A0J9YVX5 310 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 GFYI3L273 518 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 ZBTB14O43829 449 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 TTC4O95801 387 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 ERVK-10P10266 1014 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 MCM3P25205 808 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 SLC1A2P43004 574 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 ABATP80404 500 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 PRDX1Q06830 199 aaKnown RBP18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 AIMP2Q13155 320 aaKnown RBP18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 PTK6Q13882 451 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 NKG7Q16617 165 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 MUM1Q2TAK8 710 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 RNASEH2BQ5TBB1 312 aaKnown RBP18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 LRRC8EQ6NSJ5 796 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 UGT3A1Q6NUS8 523 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 FBXO42Q6P3S6 717 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 IGFL3Q6UXB1 125 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 TM9SF4Q92544 642 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 SLCO2A1Q92959 643 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 PKP4Q99569 1192 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 PLCD4Q9BRC7 762 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 GRPEL1Q9HAV7 217 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 ZNF304Q9HCX3 659 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 FBXO6Q9NRD1 293 aaPredicted RBP18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 SEMA3GQ9NS98 782 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 ZC3H7BQ9UGR2 993 aaKnown RBP18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 TSR3Q9UJK0 312 aaKnown RBP18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 CDC14AQ9UNH5 594 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 MAP4K5Q9Y4K4 846 aa18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 USP9XQ93008 2570 aaPredicted RBP18.23■□□□□ 0.51
CCDC28A-203ENST00000617445 PCSK5Q92824 1860 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 NAV2Q8IVL1 2488 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 SPTBN1Q01082 2364 aaKnown RBP18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 KRT87PA6NCN2 255 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 VSTM2BA6NLU5 285 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 TXNDC9O14530 226 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 TCP1P17987 556 aaKnown RBP18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 PGAM1P18669 254 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 SKIV2L2P42285 1042 aaKnown RBP18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 FRMPD2BQ6IN97 320 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 ZNF549Q6P9A3 640 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 COX15Q7KZN9 410 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 FAM26EQ8N5C1 309 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 RBMXL3Q8N7X1 1067 aaKnown RBP18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 MVB12AQ96EY5 273 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 SPSB2Q99619 263 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 EBNA1BP2Q99848 306 aaKnown RBP18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 ACAT2Q9BWD1 397 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 PCYOX1Q9UHG3 505 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 CDC23Q9UJX2 597 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 MED16Q9Y2X0 877 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 SHANK1Q9Y566 2161 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 RELNP78509 3460 aa18.22■□□□□ 0.51
CCDC28A-203ENST00000617445 COL12A1Q99715 3063 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 USP9YO00507 2555 aaPredicted RBP18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 LOC105369274A0A096LPK9 316 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 LOC102723532A0A0G2JNH3 316 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 PRPF4O43172 522 aaKnown RBP eCLIP18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 SLC16A8O95907 504 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 ATXN8OSP0DMR3 200 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 CARSP49589 748 aaKnown RBP18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 OCA2Q04671 838 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 PRTGQ2VWP7 1150 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 HSP90AA5PQ58FG0 334 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 GARNL3Q5VVW2 1013 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 ICE2Q659A1 982 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms