RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MARCH9Q86YJ5 346 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 LRRC56Q8IYG6 542 aaPredicted RBP14.42□□□□□ -0.1
NUP54-213ENST00000513352 C19orf47Q8N9M1 422 aaKnown RBP14.42□□□□□ -0.1
NUP54-213ENST00000513352 ARMC2Q8NEN0 867 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 OR2L3Q8NG85 312 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 OR2A1Q8NGT9 310 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 FLVCR1-AS1Q8TAF5 88 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 TCP10LQ8TDR4 215 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 ARL8AQ96BM9 186 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 SELENOSQ9BQE4 189 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 SGPP1Q9BX95 441 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 DNAJC11Q9NVH1 559 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 OPTCQ9UBM4 332 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 SLC22A14Q9Y267 594 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 PLLPQ9Y342 182 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 ACTL7BQ9Y614 415 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 SPTBN4Q9H254 2564 aa14.42□□□□□ -0.1
NUP54-213ENST00000513352 SPTBN2O15020 2390 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 KNTC1P50748 2209 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 LRRC14BA6NHZ5 514 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 A8MT66 165 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 DYNC1I1O14576 645 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 HYAL3O43820 417 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 PRICKLE3O43900 615 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 SIX3O95343 332 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 ZBTB11O95625 1053 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 SBK3P0C264 359 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 CDH1P12830 882 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 CPA3P15088 417 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 ATP5F1P24539 256 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 CCKBRP32239 447 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 ARL1P40616 181 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 ZFP36L1Q07352 338 aaKnown RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 PDK4Q16654 411 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 ZXDCQ2QGD7 858 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 TNFAIP8L3Q5GJ75 292 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 FIGLAQ6QHK4 219 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 LCTLQ6UWM7 567 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 ZYG11AQ6WRX3 759 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 LRRC70Q7Z2Q7 622 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 TEX9Q8N6V9 391 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 DCBLD1Q8N8Z6 715 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 ANKRD42Q8N9B4 389 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 UBTD2Q8WUN7 234 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 N4BP2L2Q92802 583 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 TRAPPC9Q96Q05 1148 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 DPH7Q9BTV6 452 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 PITPNM3Q9BZ71 974 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 CD244Q9BZW8 370 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 ZNF768Q9H5H4 540 aaKnown RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 PRM3Q9NNZ6 103 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 SLC6A20Q9NP91 592 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 CUEDC1Q9NWM3 386 aaPredicted RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 SH2B3Q9UQQ2 575 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 TNPO3Q9Y5L0 923 aaKnown RBP14.41□□□□□ -0.1
NUP54-213ENST00000513352 HEATR5BQ9P2D3 2071 aa14.41□□□□□ -0.1
NUP54-213ENST00000513352 TARM1B6A8C7 271 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 CLGNO14967 610 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 TOX3O15405 576 aaPredicted RBP14.4□□□□□ -0.1
NUP54-213ENST00000513352 TYROBPO43914 113 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 KLK8O60259 260 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 DLX3O60479 287 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 PRAMEF10O60809 474 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 FKBP9O95302 570 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 ANKRD34CP0C6C1 535 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 GGT5P36269 586 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 GRIA3P42263 894 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 SLC6A12P48065 614 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 YBX1P67809 324 aaKnown RBP14.4□□□□□ -0.1
NUP54-213ENST00000513352 ABATP80404 500 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 PRDX1Q06830 199 aaKnown RBP14.4□□□□□ -0.1
NUP54-213ENST00000513352 CDC16Q13042 620 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 KCNAB1Q14722 419 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 NAA25Q14CX7 972 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 C16orf72Q14CZ0 275 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 TTMPQ5BVD1 217 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 TMTC4Q5T4D3 741 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 ARHGAP22Q7Z5H3 698 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 TMPRSS11BQ86T26 416 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 KMT5CQ86Y97 462 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 SLC22A9Q8IVM8 553 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 CARFQ8N187 725 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 TMEM151AQ8N4L1 468 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 AGBL5Q8NDL9 886 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 RDH11Q8TC12 318 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 PPP4R1Q8TF05 950 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 TLCD1Q96CP7 247 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 ATP6V1G3Q96LB4 118 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 OR4K3Q96R72 315 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 CMKLR1Q99788 373 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 PDE7BQ9NP56 450 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 SSU72Q9NP77 194 aaKnown RBP14.4□□□□□ -0.1
NUP54-213ENST00000513352 PDP2Q9P2J9 529 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 LOXL2Q9Y4K0 774 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 ASB1Q9Y576 335 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 KCNE2Q9Y6J6 123 aa14.4□□□□□ -0.1
NUP54-213ENST00000513352 CCDC187A0A096LP49 1063 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 EFCAB7A8K855 629 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 STX16-NPEPL1H3BU86 382 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 H7BY64 318 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms