RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MSLNQ13421 630 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 HES3Q5TGS1 186 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 KLHL17Q6TDP4 642 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF572Q7Z3I7 529 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF571Q7Z3V5 609 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 PHF13Q86YI8 300 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 MRPS26Q9BYN8 205 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 WASH6PQ9NQA3 447 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 NXT1Q9UKK6 140 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 NDUFAF1Q9Y375 327 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 IGLV3-22A0A075B6J6 115 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 E7ENX8 843 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 TPST1O60507 370 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 PRKAA2P54646 552 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 SIRPAP78324 504 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 TAP2Q03519 686 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 DNM1P34Q6PK57 102 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 TMEM26Q6ZUK4 368 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 TEX47Q8TBZ9 253 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 RNFT2Q96EX2 444 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 ZBED6CLQ96FA7 236 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 NPAS2Q99743 824 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 PACSIN1Q9BY11 444 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 ACP6Q9NPH0 428 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 DDX28Q9NUL7 540 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 TAAR2Q9P1P5 351 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 HCSTQ9UBK5 93 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 DUXAA6NLW8 204 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 FIGNL2A6NMB9 653 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 CCL22O00626 93 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 SLC7A4O43246 635 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 TRIM13O60858 407 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 ZBTB11O95625 1053 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 CYP4B1P13584 511 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 ATP12AP54707 1039 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 YPEL5P62699 121 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 IRF9Q00978 393 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 N4BP2L1Q5TBK1 243 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 NKAIN2Q5VXU1 208 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 FIGLAQ6QHK4 219 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 JOSD2Q8TAC2 188 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 CLEC4CQ8WTT0 213 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 STK32AQ8WU08 396 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 CEP295NLQ96MC4 621 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 QPCTLQ9NXS2 382 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 WASF3Q9UPY6 502 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 RPH3AQ9Y2J0 694 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 ARL5AQ9Y689 179 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 NID2Q14112 1375 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 ARHGEF28Q8N1W1 1705 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 H3BML4 177 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 PEX11AO75192 247 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 OAZ2O95190 189 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 LRPAP1P30533 357 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 RORAP35398 523 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 HSPA7P48741 367 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 MAZP56270 477 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 RAB10P61026 200 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 GNB2P62879 340 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 NOMO3P69849 1222 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 MALLQ13021 153 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 CLCA4Q14CN2 919 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 TRAM1L1Q8N609 369 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 NAXEQ8NCW5 288 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 FIBINQ8TAL6 211 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 VPS35Q96QK1 796 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 PAFAH2Q99487 392 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 TRPV4Q9HBA0 871 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 SMURF1Q9HCE7 757 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF229Q9UJW7 825 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 PAPPAQ13219 1627 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 EIF3HO15372 352 aaKnown RBP eCLIP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 IL2RAP01589 272 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 GSTT2P0CG29 244 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 GSTT2BP0CG30 244 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 MYCLP1P12525 358 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 MYF5P13349 255 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 DNAJA1P31689 397 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 GSSP48637 474 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 RPS15AP62244 130 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 UBAP2LQ14157 1087 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 NFATC4Q14934 902 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 GPR68Q15743 365 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 NKPD1Q17RQ9 610 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 SLC2A7Q6PXP3 512 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 UNC5DQ6UXZ4 953 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 DAW1Q8N136 415 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 PMM1Q92871 262 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 GLYATL1Q969I3 302 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 CERS2Q96G23 380 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 LYARQ9NX58 379 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 NUDT4Q9NZJ9 180 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 FZD10Q9ULW2 581 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 LRCH1Q9Y2L9 728 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 HCRTR2O43614 444 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 C4BPBP20851 252 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 HOXC13P31276 330 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 GMFBP60983 142 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 RBBP4Q09028 425 aa8.95□□□□□ -0.98
LIMCH1-202ENST00000381753 EIF3IQ13347 325 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms