RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 MCM3P25205 808 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 VSX2P58304 361 aaPredicted RBP16.97■□□□□ 0.31
HDDC3-201ENST00000330334 PRDX1Q06830 199 aaKnown RBP16.97■□□□□ 0.31
HDDC3-201ENST00000330334 CTBP1Q13363 440 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 SLC9A5Q14940 896 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 PRMT9Q6P2P2 845 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 ZNF549Q6P9A3 640 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 COX15Q7KZN9 410 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 AGGF1Q8N302 714 aaeCLIP16.97■□□□□ 0.31
HDDC3-201ENST00000330334 SLC35F6Q8N357 371 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 GALNT16Q8N428 558 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 EFCAB3Q8N7B9 438 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 RBMXL3Q8N7X1 1067 aaKnown RBP16.97■□□□□ 0.31
HDDC3-201ENST00000330334 CPT1CQ8TCG5 803 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 INPP5DQ92835 1189 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 SLCO2A1Q92959 643 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 PNPLA2Q96AD5 504 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 PKP4Q99569 1192 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 SPSB2Q99619 263 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 ZFYVE21Q9BQ24 234 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 ATP13A2Q9NQ11 1180 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 C20orf96Q9NUD7 363 aaPredicted RBP16.97■□□□□ 0.31
HDDC3-201ENST00000330334 UTP6Q9NYH9 597 aaKnown RBP16.97■□□□□ 0.31
HDDC3-201ENST00000330334 FBXO5Q9UKT4 447 aa16.97■□□□□ 0.31
HDDC3-201ENST00000330334 USP9XQ93008 2570 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 KRT87PA6NCN2 255 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 VPS4BO75351 444 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 IPO13O94829 963 aaKnown RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 SKIV2L2P42285 1042 aaKnown RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 PNLIPRP1P54315 467 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 AIMP2Q13155 320 aaKnown RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 RNASEH2BQ5TBB1 312 aaKnown RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 FRMPD2BQ6IN97 320 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 CYHR1Q6ZMK1 362 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 FAM26EQ8N5C1 309 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 GIMAP7Q8NHV1 300 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 SLC30A3Q99726 388 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 PLCD4Q9BRC7 762 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 FAM167BQ9BTA0 163 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 DPH7Q9BTV6 452 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 ZNF552Q9H707 407 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 MRPS30Q9NP92 439 aaKnown RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 FBXO6Q9NRD1 293 aaPredicted RBP16.96■□□□□ 0.31
HDDC3-201ENST00000330334 SEMA3GQ9NS98 782 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 VPS4AQ9UN37 437 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 MAD1L1Q9Y6D9 718 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 PCSK5Q92824 1860 aa16.96■□□□□ 0.31
HDDC3-201ENST00000330334 MAST4O15021 2626 aa16.96■□□□□ 0.3
HDDC3-201ENST00000330334 LOC105369274A0A096LPK9 316 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 LOC102723532A0A0G2JNH3 316 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 A0A0J9YVX5 310 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 E7ENX8 843 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 ZBTB14O43829 449 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 CCNDBP1O95273 360 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 TTC4O95801 387 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 SLC16A8O95907 504 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 RPA3P35244 121 aaPredicted RBP16.95■□□□□ 0.3
HDDC3-201ENST00000330334 SLC1A2P43004 574 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 ABATP80404 500 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 TAP2Q03519 686 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 MUM1Q2TAK8 710 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 PRTGQ2VWP7 1150 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 SLC6A19Q695T7 634 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 ZNF425Q6IV72 752 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 PCGF5Q86SE9 256 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 OR4N4Q8N0Y3 316 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 Q8NA96 180 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.95■□□□□ 0.3
HDDC3-201ENST00000330334 GABPB2Q8TAK5 448 aaPredicted RBP16.95■□□□□ 0.3
HDDC3-201ENST00000330334 MVB12AQ96EY5 273 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 VPS50Q96JG6 964 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 NAT9Q9BTE0 207 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 GRPEL1Q9HAV7 217 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 ZNF304Q9HCX3 659 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 SLC6A20Q9NP91 592 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 SLAMF7Q9NQ25 335 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 ZC3H7BQ9UGR2 993 aaKnown RBP16.95■□□□□ 0.3
HDDC3-201ENST00000330334 PCYOX1Q9UHG3 505 aa16.95■□□□□ 0.3
HDDC3-201ENST00000330334 TNRC6AQ8NDV7 1962 aaKnown RBP16.95■□□□□ 0.3
HDDC3-201ENST00000330334 USP9YO00507 2555 aaPredicted RBP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 IGLV3-12A0A075B6K2 115 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 IGKV1-8A0A0C4DH67 115 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 VPS26AO75436 327 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 HAUS5O94927 633 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 TCP1P17987 556 aaKnown RBP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 PGAM1P18669 254 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 OR1D4P47884 311 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 FOXL2P58012 376 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 YBX1P67809 324 aaKnown RBP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 SRSF1Q07955 248 aaKnown RBP eCLIP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 PTK6Q13882 451 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 PPP1R7Q15435 360 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 INPP5JQ15735 1006 aaPredicted RBP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 HSP90AA5PQ58FG0 334 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 GARNL3Q5VVW2 1013 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 ICE2Q659A1 982 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 LRRC8EQ6NSJ5 796 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 SUSD1Q6UWL2 747 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 PAQR7Q86WK9 346 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 C2CD4AQ8NCU7 369 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms