RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ADCK1Q86TW2 530 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 MTDHQ86UE4 582 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 ACTRT2Q8TDY3 377 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 ADAMTS18Q8TE60 1221 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 CPXM1Q96SM3 734 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 TRMOQ9BU70 441 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 XPNPEP1Q9NQW7 623 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 WHRNQ9P202 907 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 ADAM18Q9Y3Q7 739 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 LATO43561 262 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 MFSD11O43934 449 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 RAB36O95755 333 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 C4BPAP04003 597 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC6A2P23975 617 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 POLE2P56282 527 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 CDK16Q00536 496 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 KBTBD2Q8IY47 623 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 TIMD4Q96H15 378 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 PEX11GQ96HA9 241 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 ETNK1Q9HBU6 452 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 GDAP2Q9NXN4 497 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 SEC14L3Q9UDX4 400 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 FBXO5Q9UKT4 447 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 NALCNQ8IZF0 1738 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 SMIM31A0A1B0GVY4 71 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 KLHL33A6NCF5 533 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 VASPP50552 380 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 DMTNQ08495 405 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 CHAF1BQ13112 559 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 ADAM15Q13444 863 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 BLMHQ13867 455 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 DPYSL3Q14195 570 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 PDK4Q16654 411 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 HLA-BQ31612 363 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 EIPR1Q53HC9 387 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 TLDC1Q6P9B6 456 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 VANGL1Q8TAA9 524 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 CCDC74AQ96AQ1 378 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 PAAF1Q9BRP4 392 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 ABCB10Q9NRK6 738 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 RASSF1Q9NS23 344 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 CHST7Q9NS84 486 aa8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 ZNF282Q9UDV7 671 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-202ENST00000381753 EPHB6O15197 1021 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 NARSO43776 548 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 GOT2P00505 430 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 RENP00797 406 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 MYL12AP19105 171 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 CLCN4P51793 760 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 ZBTB6Q15916 424 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 HNRNPA1L2Q32P51 320 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 AGKQ53H12 422 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 EARS2Q5JPH6 523 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 CMTM7Q96FZ5 175 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 FCRL3Q96P31 734 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 SECISBP2Q96T21 854 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 CHP1Q99653 195 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 MED18Q9BUE0 208 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 VWA7Q9Y334 891 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 FAM90A27PA6NNH2 459 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 PLD2O14939 933 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 FANCGO15287 622 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 HRH2P25021 359 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 KHKP50053 298 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 TRAPPC6BQ86SZ2 158 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 CHCHD4Q8N4Q1 142 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 GORASP1Q9BQQ3 440 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 EIF2B3Q9NR50 452 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 ADGRE2Q9UHX3 823 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 PCDHGA11Q9Y5H2 935 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 MTCH2Q9Y6C9 303 aa8.96□□□□□ -0.97
LIMCH1-202ENST00000381753 A0A0U1RQJ8 604 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 SH3D21A4FU49 640 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 MPPED1O15442 326 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 DEAF1O75398 565 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 CD70P32970 193 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 MAN2A2P49641 1150 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 DCDP81605 110 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 CBFBQ13951 182 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 NTRK3Q16288 839 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 BICRALQ6AI39 1079 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 NAPRTQ6XQN6 538 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF730Q6ZMV8 503 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 MRPL10Q7Z7H8 261 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF598Q86UK7 904 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 IRF2BP1Q8IU81 584 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 SLC35G5Q96KT7 338 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 MMADHCQ9H3L0 296 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 DECR2Q9NUI1 292 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 CKLFQ9UBR5 152 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 PLIN4Q96Q06 1357 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 LOC100653049A0A140TA62 436 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 IQCMA0A1B0GVH7 501 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 GABRR3A8MPY1 467 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 TNFSF14O43557 240 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 KRT34O76011 436 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 PGM3O95394 542 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 OAS1P00973 400 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 ESR1P03372 595 aa8.96□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM228BP0C875 321 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms