RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 FUT6P51993 359 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 NME5P56597 212 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 UGP2Q16851 508 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 IRAK1BP1Q5VVH5 260 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 SUSD4Q5VX71 490 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 TATDN1Q6P1N9 297 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 GET4Q7L5D6 327 aaPredicted RBP6.89□□□□□ -1.31
NUP54-215ENST00000514313 MUC20Q8N307 709 aaPredicted RBP6.89□□□□□ -1.31
NUP54-215ENST00000514313 RASGEF1AQ8N9B8 481 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 SPATA20Q8TB22 786 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 CCDC47Q96A33 483 aaKnown RBP6.89□□□□□ -1.31
NUP54-215ENST00000514313 CDHR1Q96JP9 859 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 FAM71F1Q96KD3 344 aaPredicted RBP6.89□□□□□ -1.31
NUP54-215ENST00000514313 KLHL5Q96PQ7 755 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 NTPCRQ9BSD7 190 aaKnown RBP6.89□□□□□ -1.31
NUP54-215ENST00000514313 POLR3CQ9BUI4 534 aaPredicted RBP6.89□□□□□ -1.31
NUP54-215ENST00000514313 LSG1Q9H089 658 aaKnown RBP6.89□□□□□ -1.31
NUP54-215ENST00000514313 S1PR5Q9H228 398 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 SNX25Q9H3E2 840 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 SRD5A3Q9H8P0 318 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 EBF2Q9HAK2 575 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 PELI2Q9HAT8 420 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 RAB9BQ9NP90 201 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 SLC38A7Q9NVC3 462 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 PTTG2Q9NZH5 202 aa6.89□□□□□ -1.31
NUP54-215ENST00000514313 TRAV24A0A0B4J272 114 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 CTDSPLO15194 276 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 YBEYP58557 167 aaPredicted RBP6.88□□□□□ -1.31
NUP54-215ENST00000514313 ZNF260Q3ZCT1 412 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 ASPRV1Q53RT3 343 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 SPOUT1Q5T280 376 aaKnown RBP6.88□□□□□ -1.31
NUP54-215ENST00000514313 CORO6Q6QEF8 472 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 PRSS55Q6UWB4 352 aaPredicted RBP6.88□□□□□ -1.31
NUP54-215ENST00000514313 BTNL8Q6UX41 500 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 NUDT13Q86X67 352 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 TMEM139Q8IV31 216 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 DCP1BQ8IZD4 617 aaKnown RBP6.88□□□□□ -1.31
NUP54-215ENST00000514313 LNX1Q8TBB1 728 aaPredicted RBP6.88□□□□□ -1.31
NUP54-215ENST00000514313 PIGBQ92521 554 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 FAM20AQ96MK3 541 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 MYADMQ96S97 322 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 PI4K2AQ9BTU6 479 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 APOBEC3GQ9HC16 384 aaKnown RBP6.88□□□□□ -1.31
NUP54-215ENST00000514313 SLCO1C1Q9NYB5 712 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 AKAP7Q9P0M2 348 aaPredicted RBP6.88□□□□□ -1.31
NUP54-215ENST00000514313 ACAD8Q9UKU7 415 aa6.88□□□□□ -1.31
NUP54-215ENST00000514313 ABCC9O60706 1549 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 MAGEA13PA6NCF6 341 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 SDR42E2A6NKP2 422 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 KBTBD13C9JR72 458 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 TTI1O43156 1089 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 RPS6KA5O75582 802 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 ANKRD34CP0C6C1 535 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 EEF1A2Q05639 463 aaKnown RBP6.87□□□□□ -1.31
NUP54-215ENST00000514313 TEFQ10587 303 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 CCDC142Q17RM4 750 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 ZNF789Q5FWF6 425 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 SIAH3Q8IW03 269 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 CCDC83Q8IWF9 413 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 OR4K1Q8NGD4 311 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 NEUROG1Q92886 237 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 ATP6V0A1Q93050 837 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 SNRNP40Q96DI7 357 aaKnown RBP6.87□□□□□ -1.31
NUP54-215ENST00000514313 SGF29Q96ES7 293 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 C17orf77Q96MU5 243 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 KRTAP4-11Q9BYQ6 195 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 GSN-AS1Q9NRJ2 163 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 FBXL5Q9UKA1 691 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 POU2F3Q9UKI9 436 aa6.87□□□□□ -1.31
NUP54-215ENST00000514313 HBS1LQ9Y450 684 aaKnown RBP6.87□□□□□ -1.31
NUP54-215ENST00000514313 IGHV4OR15-8A0A075B7B6 117 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 A0A0A6YYC8 382 aaPredicted RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 I3L1I5 382 aaPredicted RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 OAZ2O95190 189 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 BAG4O95429 457 aaKnown RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 DAOP14920 347 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 RPL21P46778 160 aaKnown RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 CDX1P47902 265 aaPredicted RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 KIF5AQ12840 1032 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 ILF2Q12905 390 aaKnown RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 NPRL3Q12980 569 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 ITPRIPL2Q3MIP1 535 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 SIRPB2Q5JXA9 342 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 RAB12Q6IQ22 244 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 C9orf47Q6ZRZ4 202 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 PHLDB2Q86SQ0 1253 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 LPCAT1Q8NF37 534 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 NCOA7Q8NI08 942 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 BCL2L2Q92843 193 aaPredicted RBP6.86□□□□□ -1.31
NUP54-215ENST00000514313 P2RX5Q93086 422 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 PYCR2Q96C36 320 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 THAP9Q9H5L6 903 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 A4GALTQ9NPC4 353 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 TCF7L2Q9NQB0 619 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 TMEM161AQ9NX61 479 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 TRPC4Q9UBN4 977 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 STX8Q9UNK0 236 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 GPR132Q9UNW8 380 aa6.86□□□□□ -1.31
NUP54-215ENST00000514313 RTCAO00442 366 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms