RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ATP10DQ9P241 1426 aa22.69■■□□□ 1.22
CLN3-255ENST00000637100 SLC4A9Q96Q91 983 aa22.69■■□□□ 1.22
CLN3-255ENST00000637100 ATP6V1AP38606 617 aa22.68■■□□□ 1.22
CLN3-255ENST00000637100 RC3H1Q5TC82 1133 aaKnown RBP22.68■■□□□ 1.22
CLN3-255ENST00000637100 PHF14O94880 888 aa22.67■■□□□ 1.22
CLN3-255ENST00000637100 DCAF5Q96JK2 942 aa22.66■■□□□ 1.22
CLN3-255ENST00000637100 GNPATO15228 680 aa22.65■■□□□ 1.22
CLN3-255ENST00000637100 HSP90AB1P08238 724 aaKnown RBP22.65■■□□□ 1.22
CLN3-255ENST00000637100 CICQ96RK0 1608 aaPredicted RBP22.64■■□□□ 1.22
CLN3-255ENST00000637100 KIF13BQ9NQT8 1826 aa22.64■■□□□ 1.21
CLN3-255ENST00000637100 ADRA2BP18089 450 aa22.63■■□□□ 1.21
CLN3-255ENST00000637100 PANK3Q9H999 370 aa22.63■■□□□ 1.21
CLN3-255ENST00000637100 KDM6AO15550 1401 aaPredicted RBP22.63■■□□□ 1.21
CLN3-255ENST00000637100 CNTNAP4Q9C0A0 1308 aa22.62■■□□□ 1.21
CLN3-255ENST00000637100 EIF4G2P78344 907 aaKnown RBP eCLIP22.62■■□□□ 1.211e-9■■■■□ 22.4
CLN3-255ENST00000637100 AMOTQ4VCS5 1084 aa22.62■■□□□ 1.21
CLN3-255ENST00000637100 PLEKHO1Q53GL0 409 aaPredicted RBP22.62■■□□□ 1.21
CLN3-255ENST00000637100 KIAA1551Q9HCM1 1747 aa22.62■■□□□ 1.21
CLN3-255ENST00000637100 COL5A3P25940 1745 aaPredicted RBP22.61■■□□□ 1.21
CLN3-255ENST00000637100 NLGN1Q8N2Q7 840 aa22.61■■□□□ 1.21
CLN3-255ENST00000637100 RPS6KA4O75676 772 aa22.6■■□□□ 1.21
CLN3-255ENST00000637100 MMP10P09238 476 aa22.6■■□□□ 1.21
CLN3-255ENST00000637100 HSPA5P11021 654 aaKnown RBP22.6■■□□□ 1.21
CLN3-255ENST00000637100 TNNT2P45379 298 aaPredicted RBP22.6■■□□□ 1.21
CLN3-255ENST00000637100 TGFB2P61812 414 aa22.6■■□□□ 1.21
CLN3-255ENST00000637100 TRAPPC3LQ5T215 181 aa22.6■■□□□ 1.21
CLN3-255ENST00000637100 RTCBQ9Y3I0 505 aaKnown RBP22.6■■□□□ 1.21
CLN3-255ENST00000637100 PXDNLA1KZ92 1463 aa22.6■■□□□ 1.21
CLN3-255ENST00000637100 ARHGEF1Q92888 912 aaKnown RBP22.59■■□□□ 1.21
CLN3-255ENST00000637100 GPBP1L1Q9HC44 474 aaPredicted RBP22.59■■□□□ 1.21
CLN3-255ENST00000637100 C10orf71Q711Q0 1435 aa22.58■■□□□ 1.21
CLN3-255ENST00000637100 GYS1P13807 737 aa22.57■■□□□ 1.2
CLN3-255ENST00000637100 ZNF530Q6P9A1 599 aaPredicted RBP22.56■■□□□ 1.2
CLN3-255ENST00000637100 MYH14Q7Z406 1995 aaKnown RBP22.55■■□□□ 1.2
CLN3-255ENST00000637100 CABP4P57796 275 aa22.54■■□□□ 1.2
CLN3-255ENST00000637100 AEBP1Q8IUX7 1158 aa22.54■■□□□ 1.2
CLN3-255ENST00000637100 RBM42Q9BTD8 480 aaKnown RBP22.54■■□□□ 1.2
CLN3-255ENST00000637100 IL13P35225 146 aa22.53■■□□□ 1.2
CLN3-255ENST00000637100 POLR3GLQ9BT43 218 aa22.53■■□□□ 1.2
CLN3-255ENST00000637100 C4AP0C0L4 1744 aa22.52■■□□□ 1.2
CLN3-255ENST00000637100 KIF3CO14782 793 aa22.52■■□□□ 1.2
CLN3-255ENST00000637100 MTHFSP49914 203 aa22.52■■□□□ 1.2
CLN3-255ENST00000637100 MORC1Q86VD1 984 aa22.52■■□□□ 1.2
CLN3-255ENST00000637100 HSPA6P17066 643 aa22.51■■□□□ 1.19
CLN3-255ENST00000637100 KCNA3P22001 575 aa22.51■■□□□ 1.19
CLN3-255ENST00000637100 NFATC2IPQ8NCF5 419 aa22.51■■□□□ 1.19
CLN3-255ENST00000637100 RFC4P35249 363 aa22.5■■□□□ 1.19
CLN3-255ENST00000637100 AMER1Q5JTC6 1135 aaPredicted RBP22.5■■□□□ 1.19
CLN3-255ENST00000637100 PCGF6Q9BYE7 350 aa22.5■■□□□ 1.19
CLN3-255ENST00000637100 A0A0G2JLW4 131 aa22.49■■□□□ 1.19
CLN3-255ENST00000637100 CCDC87Q9NVE4 849 aa22.49■■□□□ 1.19
CLN3-255ENST00000637100 WWC3Q9ULE0 1092 aa22.49■■□□□ 1.19
CLN3-255ENST00000637100 BRCA1P38398 1863 aaKnown RBP22.49■■□□□ 1.19
CLN3-255ENST00000637100 N4BP2Q86UW6 1770 aaPredicted RBP22.48■■□□□ 1.19
CLN3-255ENST00000637100 CRKLP46109 303 aaKnown RBP22.48■■□□□ 1.19
CLN3-255ENST00000637100 C1orf141Q5JVX7 400 aa22.48■■□□□ 1.19
CLN3-255ENST00000637100 SULT6B1Q6IMI4 303 aa22.48■■□□□ 1.19
CLN3-255ENST00000637100 ADAMTS7Q9UKP4 1686 aa22.48■■□□□ 1.19
CLN3-255ENST00000637100 DPEP1P16444 411 aa22.47■■□□□ 1.19
CLN3-255ENST00000637100 KNSTRNQ9Y448 316 aa22.47■■□□□ 1.19
CLN3-255ENST00000637100 TJP1Q07157 1748 aa22.47■■□□□ 1.19
CLN3-255ENST00000637100 USP42Q9H9J4 1324 aaKnown RBP22.47■■□□□ 1.19
CLN3-255ENST00000637100 SCN11AQ9UI33 1791 aa22.47■■□□□ 1.19
CLN3-255ENST00000637100 PTCD1O75127 700 aaKnown RBP22.46■■□□□ 1.19
CLN3-255ENST00000637100 INTS5Q6P9B9 1019 aaKnown RBP22.46■■□□□ 1.19
CLN3-255ENST00000637100 PARP3Q9Y6F1 533 aa22.46■■□□□ 1.19
CLN3-255ENST00000637100 AKAP4Q5JQC9 854 aa22.45■■□□□ 1.18
CLN3-255ENST00000637100 ZNF526Q8TF50 670 aaPredicted RBP22.45■■□□□ 1.18
CLN3-255ENST00000637100 BCS1LQ9Y276 419 aa22.45■■□□□ 1.18
CLN3-255ENST00000637100 MRC1P22897 1456 aa22.44■■□□□ 1.18
CLN3-255ENST00000637100 TM4SF1P30408 202 aa22.44■■□□□ 1.18
CLN3-255ENST00000637100 PER1O15534 1290 aaPredicted RBP22.43■■□□□ 1.18
CLN3-255ENST00000637100 DDR1Q08345 913 aa22.43■■□□□ 1.18
CLN3-255ENST00000637100 FKBP8Q14318 412 aa22.43■■□□□ 1.18
CLN3-255ENST00000637100 SLC52A2Q9HAB3 445 aa22.43■■□□□ 1.18
CLN3-255ENST00000637100 SRP68Q9UHB9 627 aaKnown RBP22.42■■□□□ 1.18
CLN3-255ENST00000637100 ARFGEF1Q9Y6D6 1849 aa22.42■■□□□ 1.18
CLN3-255ENST00000637100 LGR6Q9HBX8 967 aa22.41■■□□□ 1.18
CLN3-255ENST00000637100 FCHSD2O94868 740 aa22.4■■□□□ 1.18
CLN3-255ENST00000637100 POLRMTO00411 1230 aaKnown RBP22.39■■□□□ 1.17
CLN3-255ENST00000637100 RNMTO43148 476 aaKnown RBP22.39■■□□□ 1.17
CLN3-255ENST00000637100 TOMM70O94826 608 aa22.39■■□□□ 1.17
CLN3-255ENST00000637100 ARHGAP27Q6ZUM4 889 aa22.39■■□□□ 1.17
CLN3-255ENST00000637100 PIM2Q9P1W9 311 aa22.39■■□□□ 1.17
CLN3-255ENST00000637100 SOS1Q07889 1333 aaPredicted RBP22.38■■□□□ 1.17
CLN3-255ENST00000637100 CYP19A1P11511 503 aaPredicted RBP22.38■■□□□ 1.17
CLN3-255ENST00000637100 DNAJC10Q8IXB1 793 aa22.38■■□□□ 1.17
CLN3-255ENST00000637100 KCPQ6ZWJ8 1503 aa22.37■■□□□ 1.17
CLN3-255ENST00000637100 KIF7Q2M1P5 1343 aa22.37■■□□□ 1.17
CLN3-255ENST00000637100 VSIG10Q8N0Z9 540 aa22.36■■□□□ 1.17
CLN3-255ENST00000637100 MTHFSDQ2M296 383 aaKnown RBP22.34■■□□□ 1.17
CLN3-255ENST00000637100 DALRD3Q5D0E6 543 aaKnown RBP22.34■■□□□ 1.17
CLN3-255ENST00000637100 DNAJC5GQ8N7S2 189 aa22.34■■□□□ 1.17
CLN3-255ENST00000637100 NARFQ9UHQ1 456 aa22.34■■□□□ 1.17
CLN3-255ENST00000637100 NRXN2Q9P2S2 1712 aa22.34■■□□□ 1.17
CLN3-255ENST00000637100 APLP1P51693 650 aa22.33■■□□□ 1.17
CLN3-255ENST00000637100 C9orf131Q5VYM1 1079 aa22.33■■□□□ 1.17
CLN3-255ENST00000637100 USPL1Q5W0Q7 1092 aa22.33■■□□□ 1.17
CLN3-255ENST00000637100 NMRK2Q9NPI5 230 aa22.33■■□□□ 1.17
CLN3-255ENST00000637100 NPC1L1Q9UHC9 1359 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms