RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 SLAIN2Q9P270 581 aa14.47□□□□□ -0.09
CLN6-217ENST00000636964 ZBTB7BO15156 539 aaPredicted RBP14.47□□□□□ -0.09
CLN6-217ENST00000636964 RRAGDQ9NQL2 400 aaPredicted RBP14.47□□□□□ -0.09
CLN6-217ENST00000636964 G2E3Q7L622 706 aa14.46□□□□□ -0.09
CLN6-217ENST00000636964 API5Q9BZZ5 524 aaKnown RBP14.46□□□□□ -0.09
CLN6-217ENST00000636964 XIRP1Q702N8 1843 aaKnown RBP14.46□□□□□ -0.09
CLN6-217ENST00000636964 PLEKHO1Q53GL0 409 aaPredicted RBP14.46□□□□□ -0.09
CLN6-217ENST00000636964 DDRGK1Q96HY6 314 aa14.46□□□□□ -0.09
CLN6-217ENST00000636964 ABCC4O15439 1325 aa14.45□□□□□ -0.1
CLN6-217ENST00000636964 ERBB3P21860 1342 aa14.45□□□□□ -0.1
CLN6-217ENST00000636964 SPATA31A3Q5VYP0 1347 aa14.45□□□□□ -0.1
CLN6-217ENST00000636964 CSB-PGBD3P0DP91 1061 aa14.45□□□□□ -0.1
CLN6-217ENST00000636964 RGPD5Q99666 1765 aa14.45□□□□□ -0.1
CLN6-217ENST00000636964 ALS2Q96Q42 1657 aa14.45□□□□□ -0.1
CLN6-217ENST00000636964 TNS3Q68CZ2 1445 aa14.44□□□□□ -0.1
CLN6-217ENST00000636964 F6X3S4 739 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 KCNQ3O43525 872 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 C1orf141Q5JVX7 400 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 C8orf34Q49A92 452 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 AKAP4Q5JQC9 854 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 SLC4A10Q6U841 1118 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 BBXQ8WY36 941 aaPredicted RBP14.43□□□□□ -0.1
CLN6-217ENST00000636964 TAOK2Q9UL54 1235 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 PXDNQ92626 1479 aa14.43□□□□□ -0.1
CLN6-217ENST00000636964 TEFQ10587 303 aa14.42□□□□□ -0.1
CLN6-217ENST00000636964 HDAC1Q13547 482 aaPredicted RBP14.42□□□□□ -0.1
CLN6-217ENST00000636964 FAM161AQ3B820 660 aa14.42□□□□□ -0.1
CLN6-217ENST00000636964 PHRF1Q9P1Y6 1649 aaKnown RBP14.42□□□□□ -0.1
CLN6-217ENST00000636964 AMOTQ4VCS5 1084 aa14.41□□□□□ -0.1
CLN6-217ENST00000636964 STK31Q9BXU1 1019 aa14.41□□□□□ -0.1
CLN6-217ENST00000636964 EIF2S2P20042 333 aaKnown RBP14.41□□□□□ -0.1
CLN6-217ENST00000636964 RAPGEF4Q8WZA2 1011 aa14.41□□□□□ -0.1
CLN6-217ENST00000636964 CEMIPQ8WUJ3 1361 aa14.4□□□□□ -0.1
CLN6-217ENST00000636964 BTBD11A6QL63 1104 aa14.4□□□□□ -0.1
CLN6-217ENST00000636964 RNMTO43148 476 aaKnown RBP14.4□□□□□ -0.1
CLN6-217ENST00000636964 RGS12O14924 1447 aa14.4□□□□□ -0.1
CLN6-217ENST00000636964 CCDC30Q5VVM6 783 aa14.4□□□□□ -0.11
CLN6-217ENST00000636964 SIRT2Q8IXJ6 389 aa14.39□□□□□ -0.11
CLN6-217ENST00000636964 LRRC37A3O60309 1634 aa14.39□□□□□ -0.11
CLN6-217ENST00000636964 INTS3Q68E01 1043 aaKnown RBP14.39□□□□□ -0.11
CLN6-217ENST00000636964 PTPRCP08575 1304 aa14.39□□□□□ -0.11
CLN6-217ENST00000636964 HDGFL1Q5TGJ6 251 aa14.38□□□□□ -0.11
CLN6-217ENST00000636964 PRDM11Q9NQV5 511 aa14.38□□□□□ -0.11
CLN6-217ENST00000636964 FKBP5Q13451 457 aaPredicted RBP14.38□□□□□ -0.11
CLN6-217ENST00000636964 SMC5Q8IY18 1101 aa14.38□□□□□ -0.11
CLN6-217ENST00000636964 EIF4A1P60842 406 aaKnown RBP14.38□□□□□ -0.11
CLN6-217ENST00000636964 LNPKQ9C0E8 428 aa14.38□□□□□ -0.11
CLN6-217ENST00000636964 FLIIQ13045 1269 aa14.37□□□□□ -0.11
CLN6-217ENST00000636964 MEIS3Q99687 375 aa14.37□□□□□ -0.11
CLN6-217ENST00000636964 SOS2Q07890 1332 aaPredicted RBP14.37□□□□□ -0.11
CLN6-217ENST00000636964 TATP17735 454 aaPredicted RBP14.37□□□□□ -0.11
CLN6-217ENST00000636964 PHAXQ9H814 394 aaKnown RBP14.37□□□□□ -0.11
CLN6-217ENST00000636964 BABAM1Q9NWV8 329 aa14.36□□□□□ -0.11
CLN6-217ENST00000636964 NCAPD2Q15021 1401 aa14.36□□□□□ -0.11
CLN6-217ENST00000636964 ANXA1P04083 346 aa14.36□□□□□ -0.11
CLN6-217ENST00000636964 ANKRD45Q5TZF3 282 aa14.36□□□□□ -0.11
CLN6-217ENST00000636964 SEC24BO95487 1268 aa14.35□□□□□ -0.11
CLN6-217ENST00000636964 HSP90AA2PQ14568 343 aaPredicted RBP14.35□□□□□ -0.11
CLN6-217ENST00000636964 PRAMEF22A3QJZ6 481 aa14.35□□□□□ -0.11
CLN6-217ENST00000636964 SLC39A6Q13433 755 aa14.34□□□□□ -0.11
CLN6-217ENST00000636964 COL18A1P39060 1754 aa14.34□□□□□ -0.11
CLN6-217ENST00000636964 MEGF6O75095 1541 aa14.34□□□□□ -0.11
CLN6-217ENST00000636964 NUCB1Q02818 461 aa14.33□□□□□ -0.11
CLN6-217ENST00000636964 TOM1L2Q6ZVM7 507 aa14.33□□□□□ -0.11
CLN6-217ENST00000636964 STRN4Q9NRL3 753 aa14.33□□□□□ -0.11
CLN6-217ENST00000636964 CHPF2Q9P2E5 772 aa14.33□□□□□ -0.11
CLN6-217ENST00000636964 SPG7Q9UQ90 795 aa14.33□□□□□ -0.12
CLN6-217ENST00000636964 CHD1LQ86WJ1 897 aa14.33□□□□□ -0.12
CLN6-217ENST00000636964 NFATC2IPQ8NCF5 419 aa14.33□□□□□ -0.12
CLN6-217ENST00000636964 LMO7Q8WWI1 1683 aa14.33□□□□□ -0.12
CLN6-217ENST00000636964 PHKG2P15735 406 aa14.32□□□□□ -0.12
CLN6-217ENST00000636964 CPDO75976 1380 aa14.32□□□□□ -0.12
CLN6-217ENST00000636964 APBB1O00213 710 aa14.32□□□□□ -0.12
CLN6-217ENST00000636964 CDK11BP21127 795 aaKnown RBP14.32□□□□□ -0.12
CLN6-217ENST00000636964 ZFP91Q96JP5 570 aaPredicted RBP14.31□□□□□ -0.12
CLN6-217ENST00000636964 CYP27B1O15528 508 aa14.31□□□□□ -0.12
CLN6-217ENST00000636964 CCT4P50991 539 aaKnown RBP14.31□□□□□ -0.12
CLN6-217ENST00000636964 CAMTA1Q9Y6Y1 1673 aa14.31□□□□□ -0.12
CLN6-217ENST00000636964 TPRNQ4KMQ1 711 aa14.31□□□□□ -0.12
CLN6-217ENST00000636964 IFNL2Q8IZJ0 200 aa14.31□□□□□ -0.12
CLN6-217ENST00000636964 CEP85Q6P2H3 762 aa14.3□□□□□ -0.12
CLN6-217ENST00000636964 GCC1Q96CN9 775 aa14.3□□□□□ -0.12
CLN6-217ENST00000636964 CRYBG1Q9Y4K1 1723 aa14.3□□□□□ -0.12
CLN6-217ENST00000636964 GIGYF1O75420 1035 aaPredicted RBP14.3□□□□□ -0.12
CLN6-217ENST00000636964 ANKRD44Q8N8A2 993 aa14.3□□□□□ -0.12
CLN6-217ENST00000636964 EVA1CP58658 441 aa14.29□□□□□ -0.12
CLN6-217ENST00000636964 CNKSR2Q8WXI2 1034 aa14.29□□□□□ -0.12
CLN6-217ENST00000636964 FAM208AQ9UK61 1670 aaKnown RBP14.29□□□□□ -0.12
CLN6-217ENST00000636964 PROSER3Q2NL68 480 aa14.29□□□□□ -0.12
CLN6-217ENST00000636964 SLC52A2Q9HAB3 445 aa14.29□□□□□ -0.12
CLN6-217ENST00000636964 SOS1Q07889 1333 aaPredicted RBP14.29□□□□□ -0.12
CLN6-217ENST00000636964 VIRMAQ69YN4 1812 aaKnown RBP14.29□□□□□ -0.12
CLN6-217ENST00000636964 KDM6AO15550 1401 aaPredicted RBP14.29□□□□□ -0.12
CLN6-217ENST00000636964 LARP1Q6PKG0 1096 aaKnown RBP14.28□□□□□ -0.12
CLN6-217ENST00000636964 WDR17Q8IZU2 1322 aa14.28□□□□□ -0.12
CLN6-217ENST00000636964 IPO4Q8TEX9 1081 aaKnown RBP14.28□□□□□ -0.12
CLN6-217ENST00000636964 PI4KAP2A4QPH2 592 aa14.28□□□□□ -0.12
CLN6-217ENST00000636964 ZNF790Q6PG37 636 aa14.28□□□□□ -0.12
CLN6-217ENST00000636964 KDM3BQ7LBC6 1761 aa14.28□□□□□ -0.12
CLN6-217ENST00000636964 RPAP2Q8IXW5 612 aaPredicted RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms