RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 PELP1Q8IZL8 1130 aaKnown RBP16.21■□□□□ 0.19
UPF3B-204ENST00000619445 ATG3Q9NT62 314 aa16.21■□□□□ 0.19
UPF3B-204ENST00000619445 KDRP35968 1356 aa16.21■□□□□ 0.19
UPF3B-204ENST00000619445 GNPATO15228 680 aa16.2■□□□□ 0.18
UPF3B-204ENST00000619445 AMER1Q5JTC6 1135 aaPredicted RBP16.2■□□□□ 0.18
UPF3B-204ENST00000619445 LINC00116Q8NCU8 138 aa16.2■□□□□ 0.18
UPF3B-204ENST00000619445 NLGN2Q8NFZ4 835 aa16.2■□□□□ 0.18
UPF3B-204ENST00000619445 PHF14O94880 888 aa16.19■□□□□ 0.18
UPF3B-204ENST00000619445 ADRA2BP18089 450 aa16.19■□□□□ 0.18
UPF3B-204ENST00000619445 MTHFSP49914 203 aa16.19■□□□□ 0.18
UPF3B-204ENST00000619445 CABP4P57796 275 aa16.19■□□□□ 0.18
UPF3B-204ENST00000619445 RC3H1Q5TC82 1133 aaKnown RBP16.19■□□□□ 0.18
UPF3B-204ENST00000619445 KIF7Q2M1P5 1343 aa16.19■□□□□ 0.18
UPF3B-204ENST00000619445 SULT6B1Q6IMI4 303 aa16.18■□□□□ 0.18
UPF3B-204ENST00000619445 RTCBQ9Y3I0 505 aaKnown RBP16.18■□□□□ 0.18
UPF3B-204ENST00000619445 ITPK1Q13572 414 aa16.17■□□□□ 0.18
UPF3B-204ENST00000619445 IL13P35225 146 aa16.16■□□□□ 0.18
UPF3B-204ENST00000619445 TRAPPC3LQ5T215 181 aa16.16■□□□□ 0.18
UPF3B-204ENST00000619445 RBM42Q9BTD8 480 aaKnown RBP16.16■□□□□ 0.18
UPF3B-204ENST00000619445 CNTNAP4Q9C0A0 1308 aa16.16■□□□□ 0.18
UPF3B-204ENST00000619445 KDM6AO15550 1401 aaPredicted RBP16.15■□□□□ 0.18
UPF3B-204ENST00000619445 NLGN1Q8N2Q7 840 aa16.15■□□□□ 0.18
UPF3B-204ENST00000619445 NPC1L1Q9UHC9 1359 aa16.15■□□□□ 0.18
UPF3B-204ENST00000619445 COL5A3P25940 1745 aaPredicted RBP16.15■□□□□ 0.18
UPF3B-204ENST00000619445 AKAP4Q5JQC9 854 aa16.14■□□□□ 0.17
UPF3B-204ENST00000619445 AEBP1Q8IUX7 1158 aa16.14■□□□□ 0.17
UPF3B-204ENST00000619445 GOLGB1Q14789 3259 aaKnown RBP16.14■□□□□ 0.17
UPF3B-204ENST00000619445 SCN11AQ9UI33 1791 aa16.14■□□□□ 0.17
UPF3B-204ENST00000619445 PER1O15534 1290 aaPredicted RBP16.13■□□□□ 0.17
UPF3B-204ENST00000619445 RPS6KA4O75676 772 aa16.13■□□□□ 0.17
UPF3B-204ENST00000619445 YBX3P16989 372 aaKnown RBP eCLIP16.13■□□□□ 0.17
UPF3B-204ENST00000619445 AMIGO3Q86WK7 504 aa16.13■□□□□ 0.17
UPF3B-204ENST00000619445 CICQ96RK0 1608 aaPredicted RBP16.12■□□□□ 0.17
UPF3B-204ENST00000619445 DIAPH1O60610 1272 aaKnown RBP16.12■□□□□ 0.17
UPF3B-204ENST00000619445 RFC4P35249 363 aa16.12■□□□□ 0.17
UPF3B-204ENST00000619445 NFATC2IPQ8NCF5 419 aa16.12■□□□□ 0.17
UPF3B-204ENST00000619445 MMP10P09238 476 aa16.11■□□□□ 0.17
UPF3B-204ENST00000619445 TGFB2P61812 414 aa16.1■□□□□ 0.17
UPF3B-204ENST00000619445 SLC4A9Q96Q91 983 aa16.1■□□□□ 0.17
UPF3B-204ENST00000619445 KIF13BQ9NQT8 1826 aa16.09■□□□□ 0.17
UPF3B-204ENST00000619445 PTCD1O75127 700 aaKnown RBP16.09■□□□□ 0.17
UPF3B-204ENST00000619445 GIGYF1O75420 1035 aaPredicted RBP16.09■□□□□ 0.17
UPF3B-204ENST00000619445 C1QTNF8P60827 252 aa16.09■□□□□ 0.17
UPF3B-204ENST00000619445 ARHGEF1Q92888 912 aaKnown RBP16.09■□□□□ 0.17
UPF3B-204ENST00000619445 SLC52A2Q9HAB3 445 aa16.09■□□□□ 0.17
UPF3B-204ENST00000619445 MYH14Q7Z406 1995 aaKnown RBP16.08■□□□□ 0.17
UPF3B-204ENST00000619445 CC2D1BQ5T0F9 858 aaKnown RBP16.08■□□□□ 0.16
UPF3B-204ENST00000619445 CCDC87Q9NVE4 849 aa16.08■□□□□ 0.16
UPF3B-204ENST00000619445 MRC1P22897 1456 aa16.07■□□□□ 0.16
UPF3B-204ENST00000619445 CRKLP46109 303 aaKnown RBP16.07■□□□□ 0.16
UPF3B-204ENST00000619445 SMIM5Q71RC9 77 aa16.07■□□□□ 0.16
UPF3B-204ENST00000619445 PARP3Q9Y6F1 533 aa16.07■□□□□ 0.16
UPF3B-204ENST00000619445 VIRMAQ69YN4 1812 aaKnown RBP16.07■□□□□ 0.16
UPF3B-204ENST00000619445 GYS1P13807 737 aa16.06■□□□□ 0.16
UPF3B-204ENST00000619445 C4AP0C0L4 1744 aa16.06■□□□□ 0.16
UPF3B-204ENST00000619445 RNMTO43148 476 aaKnown RBP16.05■□□□□ 0.16
UPF3B-204ENST00000619445 HMOX1P09601 288 aa16.05■□□□□ 0.16
UPF3B-204ENST00000619445 C10orf71Q711Q0 1435 aa16.05■□□□□ 0.16
UPF3B-204ENST00000619445 TJP1Q07157 1748 aa16.04■□□□□ 0.16
UPF3B-204ENST00000619445 ADAMTS7Q9UKP4 1686 aa16.04■□□□□ 0.16
UPF3B-204ENST00000619445 VSIG10Q8N0Z9 540 aa16.04■□□□□ 0.16
UPF3B-204ENST00000619445 GAS2L2Q8NHY3 880 aa16.03■□□□□ 0.16
UPF3B-204ENST00000619445 CFAP53Q96M91 514 aa16.03■□□□□ 0.16
UPF3B-204ENST00000619445 ATP10DQ9P241 1426 aa16.03■□□□□ 0.16
UPF3B-204ENST00000619445 USP42Q9H9J4 1324 aaKnown RBP16.03■□□□□ 0.16
UPF3B-204ENST00000619445 ZPR1O75312 459 aa16.02■□□□□ 0.16
UPF3B-204ENST00000619445 MTHFSDQ2M296 383 aaKnown RBP16.02■□□□□ 0.16
UPF3B-204ENST00000619445 GPBP1L1Q9HC44 474 aaPredicted RBP16.02■□□□□ 0.16
UPF3B-204ENST00000619445 PXDNLA1KZ92 1463 aa16.02■□□□□ 0.16
UPF3B-204ENST00000619445 ADCY9O60503 1353 aa16.02■□□□□ 0.15
UPF3B-204ENST00000619445 LGR6Q9HBX8 967 aa16.01■□□□□ 0.15
UPF3B-204ENST00000619445 COL3A1P02461 1466 aaPredicted RBP16.01■□□□□ 0.15
UPF3B-204ENST00000619445 SENP3-EIF4A1A0A087X0R7 540 aa16■□□□□ 0.15
UPF3B-204ENST00000619445 U2SURPO15042 1029 aaKnown RBP16■□□□□ 0.15
UPF3B-204ENST00000619445 TTC5Q8N0Z6 440 aa16■□□□□ 0.15
UPF3B-204ENST00000619445 STARD3NLO95772 234 aa16■□□□□ 0.15
UPF3B-204ENST00000619445 TEFQ10587 303 aa16■□□□□ 0.15
UPF3B-204ENST00000619445 INTS5Q6P9B9 1019 aaKnown RBP16■□□□□ 0.15
UPF3B-204ENST00000619445 DNAJC10Q8IXB1 793 aa16■□□□□ 0.15
UPF3B-204ENST00000619445 TEX13AQ9BXU3 409 aaPredicted RBP16■□□□□ 0.15
UPF3B-204ENST00000619445 NUDCQ9Y266 331 aa16■□□□□ 0.15
UPF3B-204ENST00000619445 N4BP2Q86UW6 1770 aaPredicted RBP15.99■□□□□ 0.15
UPF3B-204ENST00000619445 KIAA1551Q9HCM1 1747 aa15.99■□□□□ 0.15
UPF3B-204ENST00000619445 SOS1Q07889 1333 aaPredicted RBP15.99■□□□□ 0.15
UPF3B-204ENST00000619445 GNAT3A8MTJ3 354 aa15.99■□□□□ 0.15
UPF3B-204ENST00000619445 CYP19A1P11511 503 aaPredicted RBP15.99■□□□□ 0.15
UPF3B-204ENST00000619445 UBR2Q8IWV8 1755 aa15.99■□□□□ 0.15
UPF3B-204ENST00000619445 KCPQ6ZWJ8 1503 aa15.98■□□□□ 0.15
UPF3B-204ENST00000619445 BRCA1P38398 1863 aaKnown RBP15.98■□□□□ 0.15
UPF3B-204ENST00000619445 BCS1LQ9Y276 419 aa15.98■□□□□ 0.15
UPF3B-204ENST00000619445 ARFGEF1Q9Y6D6 1849 aa15.97■□□□□ 0.15
UPF3B-204ENST00000619445 A0A087WZG4 1122 aa15.97■□□□□ 0.15
UPF3B-204ENST00000619445 A0A0G2JLW4 131 aa15.97■□□□□ 0.15
UPF3B-204ENST00000619445 SLC39A6Q13433 755 aa15.97■□□□□ 0.15
UPF3B-204ENST00000619445 FKBP8Q14318 412 aa15.97■□□□□ 0.15
UPF3B-204ENST00000619445 PIM2Q9P1W9 311 aa15.97■□□□□ 0.15
UPF3B-204ENST00000619445 SRP68Q9UHB9 627 aaKnown RBP15.97■□□□□ 0.15
UPF3B-204ENST00000619445 NARFQ9UHQ1 456 aa15.97■□□□□ 0.15
UPF3B-204ENST00000619445 COL15A1P39059 1388 aa15.96■□□□□ 0.15
UPF3B-204ENST00000619445 FCHSD2O94868 740 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms