RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SALL3Q9BXA9 1300 aa28.06■■■□□ 2.08
VPS53-211ENST00000571805 GNAI3P08754 354 aa28.05■■■□□ 2.08
VPS53-211ENST00000571805 PTMSP20962 102 aa28.05■■■□□ 2.08
VPS53-211ENST00000571805 TAF7Q15545 349 aaPredicted RBP28.05■■■□□ 2.08
VPS53-211ENST00000571805 EXOC6BQ9Y2D4 811 aa28.05■■■□□ 2.08
VPS53-211ENST00000571805 MRE11P49959 708 aa28.04■■■□□ 2.08
VPS53-211ENST00000571805 SKOR2Q2VWA4 1001 aaPredicted RBP28.04■■■□□ 2.08
VPS53-211ENST00000571805 PANK2Q9BZ23 570 aa28.04■■■□□ 2.08
VPS53-211ENST00000571805 N4BP2Q86UW6 1770 aaPredicted RBP28.04■■■□□ 2.08
VPS53-211ENST00000571805 REC8O95072 547 aa28.04■■■□□ 2.08
VPS53-211ENST00000571805 ATP8B2P98198 1209 aa28.04■■■□□ 2.08
VPS53-211ENST00000571805 NECTIN2Q92692 538 aa28.04■■■□□ 2.08
VPS53-211ENST00000571805 TUBGCP6Q96RT7 1819 aa28.04■■■□□ 2.08
VPS53-211ENST00000571805 ERC2O15083 957 aa28.03■■■□□ 2.08
VPS53-211ENST00000571805 LTV1Q96GA3 475 aaPredicted RBP28.03■■■□□ 2.08
VPS53-211ENST00000571805 PNMA6EA0A0J9YXQ4 647 aa28.02■■■□□ 2.08
VPS53-211ENST00000571805 ISY1Q9ULR0 285 aaKnown RBP28.02■■■□□ 2.08
VPS53-211ENST00000571805 LRRCC1Q9C099 1032 aa28.01■■■□□ 2.07
VPS53-211ENST00000571805 AK9Q5TCS8 1911 aa28■■■□□ 2.07
VPS53-211ENST00000571805 PXDNLA1KZ92 1463 aa27.99■■■□□ 2.07
VPS53-211ENST00000571805 GRPEL1Q9HAV7 217 aa27.99■■■□□ 2.07
VPS53-211ENST00000571805 IBTKQ9P2D0 1353 aaPredicted RBP27.99■■■□□ 2.07
VPS53-211ENST00000571805 LTN1O94822 1766 aa27.98■■■□□ 2.07
VPS53-211ENST00000571805 BAG4O95429 457 aaKnown RBP27.97■■■□□ 2.07
VPS53-211ENST00000571805 USHBP1Q8N6Y0 703 aa27.97■■■□□ 2.07
VPS53-211ENST00000571805 USP44Q9H0E7 712 aa27.97■■■□□ 2.07
VPS53-211ENST00000571805 ST18O60284 1047 aa27.97■■■□□ 2.07
VPS53-211ENST00000571805 CYP2E1P05181 493 aaPredicted RBP27.97■■■□□ 2.07
VPS53-211ENST00000571805 TSHZ3Q63HK5 1081 aa27.96■■■□□ 2.07
VPS53-211ENST00000571805 PHF8Q9UPP1 1060 aa27.96■■■□□ 2.07
VPS53-211ENST00000571805 LRRFIP2Q9Y608 721 aaKnown RBP27.96■■■□□ 2.07
VPS53-211ENST00000571805 CEMIPQ8WUJ3 1361 aa27.96■■■□□ 2.07
VPS53-211ENST00000571805 MX1P20591 662 aa27.95■■■□□ 2.07
VPS53-211ENST00000571805 NUCB2P80303 420 aa27.95■■■□□ 2.07
VPS53-211ENST00000571805 RRAGDQ9NQL2 400 aaPredicted RBP27.95■■■□□ 2.07
VPS53-211ENST00000571805 GAS2L3Q86XJ1 694 aa27.95■■■□□ 2.06
VPS53-211ENST00000571805 IP6K1Q92551 441 aa27.95■■■□□ 2.06
VPS53-211ENST00000571805 CWC22Q9HCG8 908 aaKnown RBP27.94■■■□□ 2.06
VPS53-211ENST00000571805 STAP2Q9UGK3 403 aa27.94■■■□□ 2.06
VPS53-211ENST00000571805 HDGFL1Q5TGJ6 251 aa27.93■■■□□ 2.06
VPS53-211ENST00000571805 PHAXQ9H814 394 aaKnown RBP27.93■■■□□ 2.06
VPS53-211ENST00000571805 CHD2O14647 1828 aaKnown RBP27.93■■■□□ 2.06
VPS53-211ENST00000571805 GOLGA6L22H0YM25 854 aa27.93■■■□□ 2.06
VPS53-211ENST00000571805 NFAT5O94916 1531 aa27.93■■■□□ 2.06
VPS53-211ENST00000571805 C14orf37Q86TY3 774 aa27.93■■■□□ 2.06
VPS53-211ENST00000571805 ESYT1Q9BSJ8 1104 aa27.93■■■□□ 2.06
VPS53-211ENST00000571805 ANO8Q9HCE9 1232 aaPredicted RBP27.92■■■□□ 2.06
VPS53-211ENST00000571805 MED1Q15648 1581 aaPredicted RBP27.91■■■□□ 2.06
VPS53-211ENST00000571805 NBPF6Q5VWK0 638 aa27.91■■■□□ 2.06
VPS53-211ENST00000571805 NBPF4Q96M43 638 aa27.91■■■□□ 2.06
VPS53-211ENST00000571805 UBTFL1P0CB47 393 aaPredicted RBP27.9■■■□□ 2.06
VPS53-211ENST00000571805 PKP1Q13835 747 aa27.9■■■□□ 2.06
VPS53-211ENST00000571805 SSH3Q8TE77 659 aa27.9■■■□□ 2.06
VPS53-211ENST00000571805 ZGPATQ8N5A5 531 aaKnown RBP27.89■■■□□ 2.06
VPS53-211ENST00000571805 SRCIN1Q9C0H9 1055 aa27.89■■■□□ 2.06
VPS53-211ENST00000571805 CHMLP26374 656 aa27.89■■■□□ 2.06
VPS53-211ENST00000571805 KLHL40Q2TBA0 621 aa27.89■■■□□ 2.06
VPS53-211ENST00000571805 EIF4A1P60842 406 aaKnown RBP27.88■■■□□ 2.05
VPS53-211ENST00000571805 LGR6Q9HBX8 967 aa27.88■■■□□ 2.05
VPS53-211ENST00000571805 KDM3BQ7LBC6 1761 aa27.87■■■□□ 2.05
VPS53-211ENST00000571805 SETD1BQ9UPS6 1966 aaKnown RBP27.86■■■□□ 2.05
VPS53-211ENST00000571805 AOX1Q06278 1338 aa27.85■■■□□ 2.05
VPS53-211ENST00000571805 RILPL2Q969X0 211 aa27.85■■■□□ 2.05
VPS53-211ENST00000571805 DDX49Q9Y6V7 483 aaKnown RBP27.85■■■□□ 2.05
VPS53-211ENST00000571805 POLA2Q14181 598 aa27.85■■■□□ 2.05
VPS53-211ENST00000571805 UNC5CLQ8IV45 518 aa27.85■■■□□ 2.05
VPS53-211ENST00000571805 ZDHHC9Q9Y397 364 aa27.85■■■□□ 2.05
VPS53-211ENST00000571805 TRIM6-TRIM34B2RNG4 842 aa27.84■■■□□ 2.05
VPS53-211ENST00000571805 HOXB7P09629 217 aa27.84■■■□□ 2.05
VPS53-211ENST00000571805 NEK4P51957 841 aa27.84■■■□□ 2.05
VPS53-211ENST00000571805 MCTP1Q6DN14 999 aa27.84■■■□□ 2.05
VPS53-211ENST00000571805 RGPD2P0DJD1 1756 aa27.84■■■□□ 2.05
VPS53-211ENST00000571805 RBM33Q96EV2 1170 aaKnown RBP27.84■■■□□ 2.05
VPS53-211ENST00000571805 EIF2S2P20042 333 aaKnown RBP27.83■■■□□ 2.05
VPS53-211ENST00000571805 PPP1R42Q7Z4L9 355 aa27.83■■■□□ 2.05
VPS53-211ENST00000571805 LMBRD1Q9NUN5 540 aa27.83■■■□□ 2.05
VPS53-211ENST00000571805 PALD1Q9ULE6 856 aa27.83■■■□□ 2.05
VPS53-211ENST00000571805 PHRF1Q9P1Y6 1649 aaKnown RBP27.83■■■□□ 2.05
VPS53-211ENST00000571805 RAB11FIP3O75154 756 aa27.82■■■□□ 2.04
VPS53-211ENST00000571805 IL17RAQ96F46 866 aa27.82■■■□□ 2.04
VPS53-211ENST00000571805 IL1RAPL2Q9NP60 686 aa27.82■■■□□ 2.04
VPS53-211ENST00000571805 LMO7Q8WWI1 1683 aa27.82■■■□□ 2.04
VPS53-211ENST00000571805 ANAPC15P60006 121 aa27.81■■■□□ 2.04
VPS53-211ENST00000571805 ANKLE2Q86XL3 938 aa27.81■■■□□ 2.04
VPS53-211ENST00000571805 KCNQ3O43525 872 aa27.81■■■□□ 2.04
VPS53-211ENST00000571805 KCNH5Q8NCM2 988 aa27.81■■■□□ 2.04
VPS53-211ENST00000571805 TMX3Q96JJ7 454 aa27.81■■■□□ 2.04
VPS53-211ENST00000571805 CHPF2Q9P2E5 772 aa27.81■■■□□ 2.04
VPS53-211ENST00000571805 PSME1Q06323 249 aa27.8■■■□□ 2.04
VPS53-211ENST00000571805 MCCP23508 829 aa27.8■■■□□ 2.04
VPS53-211ENST00000571805 MCM2P49736 904 aa27.8■■■□□ 2.04
VPS53-211ENST00000571805 BEND3Q5T5X7 828 aa27.8■■■□□ 2.04
VPS53-211ENST00000571805 ESCO1Q5FWF5 840 aa27.79■■■□□ 2.04
VPS53-211ENST00000571805 ANO2Q9NQ90 1003 aa27.79■■■□□ 2.04
VPS53-211ENST00000571805 SURF6O75683 361 aaKnown RBP27.79■■■□□ 2.04
VPS53-211ENST00000571805 NBPF7P0C2Y1 421 aaPredicted RBP27.79■■■□□ 2.04
VPS53-211ENST00000571805 AKAP4Q5JQC9 854 aa27.79■■■□□ 2.04
VPS53-211ENST00000571805 NUTM1Q86Y26 1132 aa27.79■■■□□ 2.04
VPS53-211ENST00000571805 DNAAF4Q8WXU2 420 aa27.78■■■□□ 2.04
VPS53-211ENST00000571805 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms