RNA–Protein interactions for RNA: ENST00000566121.1

CMTM3-212, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-212ENST00000566121 ATP6V1AP38606 617 aa20.6■□□□□ 0.89
CMTM3-212ENST00000566121 AEBP1Q8IUX7 1158 aa20.6■□□□□ 0.89
CMTM3-212ENST00000566121 LINC00116Q8NCU8 138 aa20.6■□□□□ 0.89
CMTM3-212ENST00000566121 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.59■□□□□ 0.89
CMTM3-212ENST00000566121 ADRA2BP18089 450 aa20.59■□□□□ 0.89
CMTM3-212ENST00000566121 ITPK1Q13572 414 aa20.59■□□□□ 0.89
CMTM3-212ENST00000566121 AKAP4Q5JQC9 854 aa20.59■□□□□ 0.89
CMTM3-212ENST00000566121 C1orf141Q5JVX7 400 aa20.59■□□□□ 0.89
CMTM3-212ENST00000566121 KDM6AO15550 1401 aaPredicted RBP20.59■□□□□ 0.89
CMTM3-212ENST00000566121 UBR3Q6ZT12 1888 aa20.58■□□□□ 0.89
CMTM3-212ENST00000566121 MSH5O43196 834 aa20.58■□□□□ 0.89
CMTM3-212ENST00000566121 CABP4P57796 275 aa20.57■□□□□ 0.88
CMTM3-212ENST00000566121 SLC4A9Q96Q91 983 aa20.57■□□□□ 0.88
CMTM3-212ENST00000566121 CNTNAP4Q9C0A0 1308 aa20.56■□□□□ 0.88
CMTM3-212ENST00000566121 AMIGO3Q86WK7 504 aa20.56■□□□□ 0.88
CMTM3-212ENST00000566121 GRIN3BO60391 1043 aa20.55■□□□□ 0.88
CMTM3-212ENST00000566121 DIAPH1O60610 1272 aaKnown RBP20.55■□□□□ 0.88
CMTM3-212ENST00000566121 CHD4Q14839 1912 aa20.55■□□□□ 0.88
CMTM3-212ENST00000566121 NFATC2IPQ8NCF5 419 aa20.54■□□□□ 0.88
CMTM3-212ENST00000566121 GPR162Q16538 588 aa20.53■□□□□ 0.88
CMTM3-212ENST00000566121 RTCBQ9Y3I0 505 aaKnown RBP20.53■□□□□ 0.88
CMTM3-212ENST00000566121 GNPATO15228 680 aa20.52■□□□□ 0.88
CMTM3-212ENST00000566121 RPS6KA4O75676 772 aa20.52■□□□□ 0.88
CMTM3-212ENST00000566121 TRAPPC3LQ5T215 181 aa20.52■□□□□ 0.88
CMTM3-212ENST00000566121 NLGN1Q8N2Q7 840 aa20.52■□□□□ 0.88
CMTM3-212ENST00000566121 NLGN2Q8NFZ4 835 aa20.52■□□□□ 0.88
CMTM3-212ENST00000566121 CC2D1BQ5T0F9 858 aaKnown RBP20.51■□□□□ 0.87
CMTM3-212ENST00000566121 SLC52A2Q9HAB3 445 aa20.51■□□□□ 0.87
CMTM3-212ENST00000566121 CICQ96RK0 1608 aaPredicted RBP20.51■□□□□ 0.87
CMTM3-212ENST00000566121 MSL1Q68DK7 614 aa20.5■□□□□ 0.87
CMTM3-212ENST00000566121 ZNF784Q8NCA9 323 aaPredicted RBP20.49■□□□□ 0.87
CMTM3-212ENST00000566121 RBM42Q9BTD8 480 aaKnown RBP20.49■□□□□ 0.87
CMTM3-212ENST00000566121 COL3A1P02461 1466 aaPredicted RBP20.49■□□□□ 0.87
CMTM3-212ENST00000566121 SCN11AQ9UI33 1791 aa20.48■□□□□ 0.87
CMTM3-212ENST00000566121 MRC1P22897 1456 aa20.48■□□□□ 0.87
CMTM3-212ENST00000566121 ADAMTS7Q9UKP4 1686 aa20.48■□□□□ 0.87
CMTM3-212ENST00000566121 RNMTO43148 476 aaKnown RBP20.47■□□□□ 0.87
CMTM3-212ENST00000566121 PHF14O94880 888 aa20.47■□□□□ 0.87
CMTM3-212ENST00000566121 MTHFSDQ2M296 383 aaKnown RBP20.47■□□□□ 0.87
CMTM3-212ENST00000566121 VSIG10Q8N0Z9 540 aa20.47■□□□□ 0.87
CMTM3-212ENST00000566121 ARHGEF1Q92888 912 aaKnown RBP20.47■□□□□ 0.87
CMTM3-212ENST00000566121 COL5A3P25940 1745 aaPredicted RBP20.47■□□□□ 0.87
CMTM3-212ENST00000566121 HMOX1P09601 288 aa20.45■□□□□ 0.86
CMTM3-212ENST00000566121 KLHL34Q8N239 644 aa20.45■□□□□ 0.86
CMTM3-212ENST00000566121 LGR6Q9HBX8 967 aa20.45■□□□□ 0.86
CMTM3-212ENST00000566121 YBX3P16989 372 aaKnown RBP eCLIP20.44■□□□□ 0.861e-6■■□□□ 12.5
CMTM3-212ENST00000566121 TGFB2P61812 414 aa20.44■□□□□ 0.86
CMTM3-212ENST00000566121 MYH14Q7Z406 1995 aaKnown RBP20.43■□□□□ 0.86
CMTM3-212ENST00000566121 PTCD1O75127 700 aaKnown RBP20.43■□□□□ 0.86
CMTM3-212ENST00000566121 GYS1P13807 737 aa20.43■□□□□ 0.86
CMTM3-212ENST00000566121 RFC4P35249 363 aa20.43■□□□□ 0.86
CMTM3-212ENST00000566121 SMIM5Q71RC9 77 aa20.43■□□□□ 0.86
CMTM3-212ENST00000566121 GAS2L2Q8NHY3 880 aa20.43■□□□□ 0.86
CMTM3-212ENST00000566121 MMP10P09238 476 aa20.42■□□□□ 0.86
CMTM3-212ENST00000566121 CRKLP46109 303 aaKnown RBP20.42■□□□□ 0.86
CMTM3-212ENST00000566121 INTS5Q6P9B9 1019 aaKnown RBP20.41■□□□□ 0.86
CMTM3-212ENST00000566121 CFAP53Q96M91 514 aa20.41■□□□□ 0.86
CMTM3-212ENST00000566121 GNAT3A8MTJ3 354 aa20.39■□□□□ 0.85
CMTM3-212ENST00000566121 CYP19A1P11511 503 aaPredicted RBP20.39■□□□□ 0.85
CMTM3-212ENST00000566121 NUDCQ9Y266 331 aa20.39■□□□□ 0.85
CMTM3-212ENST00000566121 USP42Q9H9J4 1324 aaKnown RBP20.38■□□□□ 0.85
CMTM3-212ENST00000566121 KIF13BQ9NQT8 1826 aa20.38■□□□□ 0.85
CMTM3-212ENST00000566121 CEMIPQ8WUJ3 1361 aa20.37■□□□□ 0.85
CMTM3-212ENST00000566121 FCHSD2O94868 740 aa20.37■□□□□ 0.85
CMTM3-212ENST00000566121 IL17REQ8NFR9 667 aa20.37■□□□□ 0.85
CMTM3-212ENST00000566121 TEX13AQ9BXU3 409 aaPredicted RBP20.37■□□□□ 0.85
CMTM3-212ENST00000566121 CCDC87Q9NVE4 849 aa20.37■□□□□ 0.85
CMTM3-212ENST00000566121 C10orf71Q711Q0 1435 aa20.36■□□□□ 0.85
CMTM3-212ENST00000566121 U2SURPO15042 1029 aaKnown RBP20.36■□□□□ 0.85
CMTM3-212ENST00000566121 PPP2R1AP30153 589 aa20.36■□□□□ 0.85
CMTM3-212ENST00000566121 PELP1Q8IZL8 1130 aaKnown RBP20.36■□□□□ 0.85
CMTM3-212ENST00000566121 RSPH6AQ9H0K4 717 aa20.36■□□□□ 0.85
CMTM3-212ENST00000566121 KCPQ6ZWJ8 1503 aa20.36■□□□□ 0.85
CMTM3-212ENST00000566121 TJP1Q07157 1748 aa20.36■□□□□ 0.85
CMTM3-212ENST00000566121 SOS1Q07889 1333 aaPredicted RBP20.35■□□□□ 0.85
CMTM3-212ENST00000566121 TM4SF1P30408 202 aa20.35■□□□□ 0.85
CMTM3-212ENST00000566121 DNAJC10Q8IXB1 793 aa20.35■□□□□ 0.85
CMTM3-212ENST00000566121 PARP3Q9Y6F1 533 aa20.35■□□□□ 0.85
CMTM3-212ENST00000566121 HTATSF1O43719 755 aaKnown RBP20.34■□□□□ 0.85
CMTM3-212ENST00000566121 STARD3NLO95772 234 aa20.33■□□□□ 0.85
CMTM3-212ENST00000566121 SLC39A6Q13433 755 aa20.33■□□□□ 0.85
CMTM3-212ENST00000566121 ZNF790Q6PG37 636 aa20.33■□□□□ 0.85
CMTM3-212ENST00000566121 NARFQ9UHQ1 456 aa20.33■□□□□ 0.85
CMTM3-212ENST00000566121 PXDNLA1KZ92 1463 aa20.32■□□□□ 0.84
CMTM3-212ENST00000566121 TEFQ10587 303 aa20.32■□□□□ 0.84
CMTM3-212ENST00000566121 C4AP0C0L4 1744 aa20.32■□□□□ 0.84
CMTM3-212ENST00000566121 ZPR1O75312 459 aa20.31■□□□□ 0.84
CMTM3-212ENST00000566121 FKBP8Q14318 412 aa20.31■□□□□ 0.84
CMTM3-212ENST00000566121 TTC5Q8N0Z6 440 aa20.31■□□□□ 0.84
CMTM3-212ENST00000566121 PHACTR3Q96KR7 559 aa20.31■□□□□ 0.84
CMTM3-212ENST00000566121 ADCY9O60503 1353 aa20.31■□□□□ 0.84
CMTM3-212ENST00000566121 UBR2Q8IWV8 1755 aa20.31■□□□□ 0.84
CMTM3-212ENST00000566121 PRKAR2BP31323 418 aa20.3■□□□□ 0.84
CMTM3-212ENST00000566121 EIF5P55010 431 aaKnown RBP20.3■□□□□ 0.84
CMTM3-212ENST00000566121 VIRMAQ69YN4 1812 aaKnown RBP20.3■□□□□ 0.84
CMTM3-212ENST00000566121 A0A087WZG4 1122 aa20.29■□□□□ 0.84
CMTM3-212ENST00000566121 SRP68Q9UHB9 627 aaKnown RBP20.29■□□□□ 0.84
CMTM3-212ENST00000566121 HEG1Q9ULI3 1381 aa20.29■□□□□ 0.84
CMTM3-212ENST00000566121 KIAA1551Q9HCM1 1747 aa20.28■□□□□ 0.84
CMTM3-212ENST00000566121 POLRMTO00411 1230 aaKnown RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms