RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 KDRP35968 1356 aa19.16■□□□□ 0.66
LDLR-213ENST00000560502 KIF13BQ9NQT8 1826 aa19.16■□□□□ 0.66
LDLR-213ENST00000560502 PHF14O94880 888 aa19.15■□□□□ 0.66
LDLR-213ENST00000560502 ASAP1Q9ULH1 1129 aa19.15■□□□□ 0.66
LDLR-213ENST00000560502 IGSF1Q8N6C5 1336 aa19.15■□□□□ 0.66
LDLR-213ENST00000560502 ADCY9O60503 1353 aa19.15■□□□□ 0.66
LDLR-213ENST00000560502 KIAA1551Q9HCM1 1747 aa19.14■□□□□ 0.66
LDLR-213ENST00000560502 ATP10DQ9P241 1426 aa19.14■□□□□ 0.65
LDLR-213ENST00000560502 ATG3Q9NT62 314 aa19.13■□□□□ 0.65
LDLR-213ENST00000560502 CICQ96RK0 1608 aaPredicted RBP19.13■□□□□ 0.65
LDLR-213ENST00000560502 GNPATO15228 680 aa19.11■□□□□ 0.65
LDLR-213ENST00000560502 ATP6V1AP38606 617 aa19.11■□□□□ 0.65
LDLR-213ENST00000560502 TNNT2P45379 298 aaPredicted RBP19.1■□□□□ 0.65
LDLR-213ENST00000560502 KDM6AO15550 1401 aaPredicted RBP19.09■□□□□ 0.65
LDLR-213ENST00000560502 SLC4A9Q96Q91 983 aa19.09■□□□□ 0.65
LDLR-213ENST00000560502 POLR3GLQ9BT43 218 aa19.09■□□□□ 0.65
LDLR-213ENST00000560502 MYH14Q7Z406 1995 aaKnown RBP19.09■□□□□ 0.65
LDLR-213ENST00000560502 C4AP0C0L4 1744 aa19.08■□□□□ 0.65
LDLR-213ENST00000560502 ERVV-2B6SEH9 535 aa19.08■□□□□ 0.64
LDLR-213ENST00000560502 PXDNLA1KZ92 1463 aa19.07■□□□□ 0.64
LDLR-213ENST00000560502 N4BP2Q86UW6 1770 aaPredicted RBP19.06■□□□□ 0.64
LDLR-213ENST00000560502 DCAF5Q96JK2 942 aa19.06■□□□□ 0.64
LDLR-213ENST00000560502 PANK3Q9H999 370 aa19.06■□□□□ 0.64
LDLR-213ENST00000560502 BRCA1P38398 1863 aaKnown RBP19.05■□□□□ 0.64
LDLR-213ENST00000560502 HSP90AB1P08238 724 aaKnown RBP19.05■□□□□ 0.64
LDLR-213ENST00000560502 C10orf71Q711Q0 1435 aa19.05■□□□□ 0.64
LDLR-213ENST00000560502 TJP1Q07157 1748 aa19.05■□□□□ 0.64
LDLR-213ENST00000560502 CNTNAP4Q9C0A0 1308 aa19.04■□□□□ 0.64
LDLR-213ENST00000560502 SCN11AQ9UI33 1791 aa19.04■□□□□ 0.64
LDLR-213ENST00000560502 MMP10P09238 476 aa19.04■□□□□ 0.64
LDLR-213ENST00000560502 PLEKHO1Q53GL0 409 aaPredicted RBP19.04■□□□□ 0.64
LDLR-213ENST00000560502 ADRA2BP18089 450 aa19.03■□□□□ 0.64
LDLR-213ENST00000560502 RC3H1Q5TC82 1133 aaKnown RBP19.03■□□□□ 0.64
LDLR-213ENST00000560502 WWC3Q9ULE0 1092 aa19.03■□□□□ 0.64
LDLR-213ENST00000560502 RTCBQ9Y3I0 505 aaKnown RBP19.03■□□□□ 0.64
LDLR-213ENST00000560502 AMOTQ4VCS5 1084 aa19.02■□□□□ 0.64
LDLR-213ENST00000560502 ZNF530Q6P9A1 599 aaPredicted RBP19.02■□□□□ 0.64
LDLR-213ENST00000560502 AEBP1Q8IUX7 1158 aa19.02■□□□□ 0.64
LDLR-213ENST00000560502 GPBP1L1Q9HC44 474 aaPredicted RBP19.02■□□□□ 0.64
LDLR-213ENST00000560502 TRAPPC3LQ5T215 181 aa19.01■□□□□ 0.63
LDLR-213ENST00000560502 RBM42Q9BTD8 480 aaKnown RBP19.01■□□□□ 0.63
LDLR-213ENST00000560502 VIRMAQ69YN4 1812 aaKnown RBP19■□□□□ 0.63
LDLR-213ENST00000560502 NLGN1Q8N2Q7 840 aa19■□□□□ 0.63
LDLR-213ENST00000560502 ARHGEF1Q92888 912 aaKnown RBP19■□□□□ 0.63
LDLR-213ENST00000560502 ADAMTS7Q9UKP4 1686 aa19■□□□□ 0.63
LDLR-213ENST00000560502 RPS6KA4O75676 772 aa18.99■□□□□ 0.63
LDLR-213ENST00000560502 GYS1P13807 737 aa18.99■□□□□ 0.63
LDLR-213ENST00000560502 CABP4P57796 275 aa18.99■□□□□ 0.63
LDLR-213ENST00000560502 MORC1Q86VD1 984 aa18.99■□□□□ 0.63
LDLR-213ENST00000560502 ARFGEF1Q9Y6D6 1849 aa18.98■□□□□ 0.63
LDLR-213ENST00000560502 TGFB2P61812 414 aa18.98■□□□□ 0.63
LDLR-213ENST00000560502 CEP350Q5VT06 3117 aa18.97■□□□□ 0.63
LDLR-213ENST00000560502 MTHFSP49914 203 aa18.97■□□□□ 0.63
LDLR-213ENST00000560502 ZNF526Q8TF50 670 aaPredicted RBP18.97■□□□□ 0.63
LDLR-213ENST00000560502 MRC1P22897 1456 aa18.97■□□□□ 0.63
LDLR-213ENST00000560502 IL13P35225 146 aa18.96■□□□□ 0.63
LDLR-213ENST00000560502 C1orf141Q5JVX7 400 aa18.96■□□□□ 0.63
LDLR-213ENST00000560502 SULT6B1Q6IMI4 303 aa18.96■□□□□ 0.63
LDLR-213ENST00000560502 KIF7Q2M1P5 1343 aa18.96■□□□□ 0.63
LDLR-213ENST00000560502 RFC4P35249 363 aa18.94■□□□□ 0.62
LDLR-213ENST00000560502 DDX10Q13206 875 aaKnown RBP18.94■□□□□ 0.62
LDLR-213ENST00000560502 AMER1Q5JTC6 1135 aaPredicted RBP18.94■□□□□ 0.62
LDLR-213ENST00000560502 NFATC2IPQ8NCF5 419 aa18.94■□□□□ 0.62
LDLR-213ENST00000560502 CCDC87Q9NVE4 849 aa18.94■□□□□ 0.62
LDLR-213ENST00000560502 A0A0G2JLW4 131 aa18.93■□□□□ 0.62
LDLR-213ENST00000560502 KIF3CO14782 793 aa18.93■□□□□ 0.62
LDLR-213ENST00000560502 PTCD1O75127 700 aaKnown RBP18.93■□□□□ 0.62
LDLR-213ENST00000560502 HSPA6P17066 643 aa18.93■□□□□ 0.62
LDLR-213ENST00000560502 CRKLP46109 303 aaKnown RBP18.93■□□□□ 0.62
LDLR-213ENST00000560502 KNSTRNQ9Y448 316 aa18.93■□□□□ 0.62
LDLR-213ENST00000560502 DPEP1P16444 411 aa18.92■□□□□ 0.62
LDLR-213ENST00000560502 BCS1LQ9Y276 419 aa18.92■□□□□ 0.62
LDLR-213ENST00000560502 PARP3Q9Y6F1 533 aa18.92■□□□□ 0.62
LDLR-213ENST00000560502 USP42Q9H9J4 1324 aaKnown RBP18.92■□□□□ 0.62
LDLR-213ENST00000560502 KCPQ6ZWJ8 1503 aa18.9■□□□□ 0.62
LDLR-213ENST00000560502 KCNA3P22001 575 aa18.9■□□□□ 0.62
LDLR-213ENST00000560502 AKAP4Q5JQC9 854 aa18.9■□□□□ 0.62
LDLR-213ENST00000560502 SRP68Q9UHB9 627 aaKnown RBP18.9■□□□□ 0.62
LDLR-213ENST00000560502 UBR2Q8IWV8 1755 aa18.9■□□□□ 0.62
LDLR-213ENST00000560502 DDR1Q08345 913 aa18.89■□□□□ 0.61
LDLR-213ENST00000560502 FKBP8Q14318 412 aa18.89■□□□□ 0.61
LDLR-213ENST00000560502 INTS5Q6P9B9 1019 aaKnown RBP18.89■□□□□ 0.61
LDLR-213ENST00000560502 SLC52A2Q9HAB3 445 aa18.88■□□□□ 0.61
LDLR-213ENST00000560502 NRXN2Q9P2S2 1712 aa18.88■□□□□ 0.61
LDLR-213ENST00000560502 AFDNP55196 1824 aaKnown RBP18.88■□□□□ 0.61
LDLR-213ENST00000560502 FCHSD2O94868 740 aa18.87■□□□□ 0.61
LDLR-213ENST00000560502 SBF1O95248 1867 aa18.86■□□□□ 0.61
LDLR-213ENST00000560502 DLEC1Q9Y238 1755 aa18.86■□□□□ 0.61
LDLR-213ENST00000560502 SOS1Q07889 1333 aaPredicted RBP18.86■□□□□ 0.61
LDLR-213ENST00000560502 ARHGAP27Q6ZUM4 889 aa18.86■□□□□ 0.61
LDLR-213ENST00000560502 DNAJC10Q8IXB1 793 aa18.86■□□□□ 0.61
LDLR-213ENST00000560502 MIER1Q8N108 512 aa18.86■□□□□ 0.61
LDLR-213ENST00000560502 LGR6Q9HBX8 967 aa18.86■□□□□ 0.61
LDLR-213ENST00000560502 RNMTO43148 476 aaKnown RBP18.85■□□□□ 0.61
LDLR-213ENST00000560502 COL3A1P02461 1466 aaPredicted RBP18.84■□□□□ 0.61
LDLR-213ENST00000560502 POLRMTO00411 1230 aaKnown RBP18.84■□□□□ 0.61
LDLR-213ENST00000560502 PER1O15534 1290 aaPredicted RBP18.84■□□□□ 0.61
LDLR-213ENST00000560502 TM4SF1P30408 202 aa18.84■□□□□ 0.61
LDLR-213ENST00000560502 PIM2Q9P1W9 311 aa18.84■□□□□ 0.61
LDLR-213ENST00000560502 ANP32CO43423 234 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms