RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 PHF14O94880 888 aa16.66■□□□□ 0.26
SPG11-219ENST00000559822 CABP4P57796 275 aa16.66■□□□□ 0.26
SPG11-219ENST00000559822 SULT6B1Q6IMI4 303 aa16.66■□□□□ 0.26
SPG11-219ENST00000559822 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
SPG11-219ENST00000559822 GNPATO15228 680 aa16.65■□□□□ 0.26
SPG11-219ENST00000559822 MTHFSP49914 203 aa16.65■□□□□ 0.26
SPG11-219ENST00000559822 AEBP1Q8IUX7 1158 aa16.65■□□□□ 0.26
SPG11-219ENST00000559822 CD2APQ9Y5K6 639 aa16.65■□□□□ 0.26
SPG11-219ENST00000559822 ZNF831Q5JPB2 1677 aa16.65■□□□□ 0.26
SPG11-219ENST00000559822 IL13P35225 146 aa16.64■□□□□ 0.25
SPG11-219ENST00000559822 ITPK1Q13572 414 aa16.64■□□□□ 0.25
SPG11-219ENST00000559822 NLGN2Q8NFZ4 835 aa16.64■□□□□ 0.25
SPG11-219ENST00000559822 KDM6AO15550 1401 aaPredicted RBP16.63■□□□□ 0.25
SPG11-219ENST00000559822 GRIN3BO60391 1043 aa16.63■□□□□ 0.25
SPG11-219ENST00000559822 RBM42Q9BTD8 480 aaKnown RBP16.63■□□□□ 0.25
SPG11-219ENST00000559822 PER1O15534 1290 aaPredicted RBP16.62■□□□□ 0.25
SPG11-219ENST00000559822 ZNF784Q8NCA9 323 aaPredicted RBP16.62■□□□□ 0.25
SPG11-219ENST00000559822 RC3H1Q5TC82 1133 aaKnown RBP16.61■□□□□ 0.25
SPG11-219ENST00000559822 AMIGO3Q86WK7 504 aa16.61■□□□□ 0.25
SPG11-219ENST00000559822 RTCBQ9Y3I0 505 aaKnown RBP16.61■□□□□ 0.25
SPG11-219ENST00000559822 NPC1L1Q9UHC9 1359 aa16.61■□□□□ 0.25
SPG11-219ENST00000559822 ADRA2BP18089 450 aa16.6■□□□□ 0.25
SPG11-219ENST00000559822 AKAP4Q5JQC9 854 aa16.6■□□□□ 0.25
SPG11-219ENST00000559822 CC2D1BQ5T0F9 858 aaKnown RBP16.6■□□□□ 0.25
SPG11-219ENST00000559822 CNTNAP4Q9C0A0 1308 aa16.6■□□□□ 0.25
SPG11-219ENST00000559822 UTRNP46939 3433 aa16.6■□□□□ 0.25
SPG11-219ENST00000559822 DIAPH1O60610 1272 aaKnown RBP16.59■□□□□ 0.25
SPG11-219ENST00000559822 TRAPPC3LQ5T215 181 aa16.59■□□□□ 0.25
SPG11-219ENST00000559822 COL5A3P25940 1745 aaPredicted RBP16.59■□□□□ 0.25
SPG11-219ENST00000559822 NFATC2IPQ8NCF5 419 aa16.58■□□□□ 0.24
SPG11-219ENST00000559822 SCN11AQ9UI33 1791 aa16.58■□□□□ 0.24
SPG11-219ENST00000559822 SMIM5Q71RC9 77 aa16.57■□□□□ 0.24
SPG11-219ENST00000559822 SLC4A9Q96Q91 983 aa16.57■□□□□ 0.24
SPG11-219ENST00000559822 PTCD1O75127 700 aaKnown RBP16.56■□□□□ 0.24
SPG11-219ENST00000559822 RPS6KA4O75676 772 aa16.56■□□□□ 0.24
SPG11-219ENST00000559822 HMOX1P09601 288 aa16.56■□□□□ 0.24
SPG11-219ENST00000559822 YBX3P16989 372 aaKnown RBP eCLIP16.56■□□□□ 0.24
SPG11-219ENST00000559822 NLGN1Q8N2Q7 840 aa16.56■□□□□ 0.24
SPG11-219ENST00000559822 RFC4P35249 363 aa16.55■□□□□ 0.24
SPG11-219ENST00000559822 CICQ96RK0 1608 aaPredicted RBP16.55■□□□□ 0.24
SPG11-219ENST00000559822 MMP10P09238 476 aa16.54■□□□□ 0.24
SPG11-219ENST00000559822 SLC52A2Q9HAB3 445 aa16.54■□□□□ 0.24
SPG11-219ENST00000559822 ARHGEF1Q92888 912 aaKnown RBP16.53■□□□□ 0.24
SPG11-219ENST00000559822 MRC1P22897 1456 aa16.53■□□□□ 0.24
SPG11-219ENST00000559822 CRKLP46109 303 aaKnown RBP16.52■□□□□ 0.24
SPG11-219ENST00000559822 TJP1Q07157 1748 aa16.51■□□□□ 0.23
SPG11-219ENST00000559822 U2SURPO15042 1029 aaKnown RBP16.51■□□□□ 0.23
SPG11-219ENST00000559822 RNMTO43148 476 aaKnown RBP16.51■□□□□ 0.23
SPG11-219ENST00000559822 CFAP53Q96M91 514 aa16.51■□□□□ 0.23
SPG11-219ENST00000559822 CCDC87Q9NVE4 849 aa16.51■□□□□ 0.23
SPG11-219ENST00000559822 COL3A1P02461 1466 aaPredicted RBP16.5■□□□□ 0.23
SPG11-219ENST00000559822 MYH14Q7Z406 1995 aaKnown RBP16.5■□□□□ 0.23
SPG11-219ENST00000559822 GYS1P13807 737 aa16.5■□□□□ 0.23
SPG11-219ENST00000559822 CNGB1Q14028 1251 aaPredicted RBP16.5■□□□□ 0.23
SPG11-219ENST00000559822 MTHFSDQ2M296 383 aaKnown RBP16.5■□□□□ 0.23
SPG11-219ENST00000559822 LGR6Q9HBX8 967 aa16.5■□□□□ 0.23
SPG11-219ENST00000559822 PARP3Q9Y6F1 533 aa16.5■□□□□ 0.23
SPG11-219ENST00000559822 C4AP0C0L4 1744 aa16.5■□□□□ 0.23
SPG11-219ENST00000559822 ADAMTS7Q9UKP4 1686 aa16.5■□□□□ 0.23
SPG11-219ENST00000559822 VIRMAQ69YN4 1812 aaKnown RBP16.49■□□□□ 0.23
SPG11-219ENST00000559822 TGFB2P61812 414 aa16.49■□□□□ 0.23
SPG11-219ENST00000559822 GAS2L2Q8NHY3 880 aa16.49■□□□□ 0.23
SPG11-219ENST00000559822 KIF13BQ9NQT8 1826 aa16.49■□□□□ 0.23
SPG11-219ENST00000559822 GOLGB1Q14789 3259 aaKnown RBP16.48■□□□□ 0.23
SPG11-219ENST00000559822 C10orf71Q711Q0 1435 aa16.48■□□□□ 0.23
SPG11-219ENST00000559822 GIGYF1O75420 1035 aaPredicted RBP16.48■□□□□ 0.23
SPG11-219ENST00000559822 VSIG10Q8N0Z9 540 aa16.47■□□□□ 0.23
SPG11-219ENST00000559822 USP42Q9H9J4 1324 aaKnown RBP16.46■□□□□ 0.23
SPG11-219ENST00000559822 C1QTNF8P60827 252 aa16.46■□□□□ 0.23
SPG11-219ENST00000559822 DNAJC10Q8IXB1 793 aa16.46■□□□□ 0.23
SPG11-219ENST00000559822 TTC5Q8N0Z6 440 aa16.46■□□□□ 0.23
SPG11-219ENST00000559822 NUDCQ9Y266 331 aa16.46■□□□□ 0.23
SPG11-219ENST00000559822 PXDNLA1KZ92 1463 aa16.46■□□□□ 0.23
SPG11-219ENST00000559822 KCPQ6ZWJ8 1503 aa16.45■□□□□ 0.22
SPG11-219ENST00000559822 GNAT3A8MTJ3 354 aa16.45■□□□□ 0.22
SPG11-219ENST00000559822 ZPR1O75312 459 aa16.45■□□□□ 0.22
SPG11-219ENST00000559822 TEFQ10587 303 aa16.45■□□□□ 0.22
SPG11-219ENST00000559822 SLC39A6Q13433 755 aa16.45■□□□□ 0.22
SPG11-219ENST00000559822 INTS5Q6P9B9 1019 aaKnown RBP16.45■□□□□ 0.22
SPG11-219ENST00000559822 ATP10DQ9P241 1426 aa16.45■□□□□ 0.22
SPG11-219ENST00000559822 CYP19A1P11511 503 aaPredicted RBP16.44■□□□□ 0.22
SPG11-219ENST00000559822 WWC3Q9ULE0 1092 aa16.44■□□□□ 0.22
SPG11-219ENST00000559822 SOS1Q07889 1333 aaPredicted RBP16.44■□□□□ 0.22
SPG11-219ENST00000559822 SRP68Q9UHB9 627 aaKnown RBP16.43■□□□□ 0.22
SPG11-219ENST00000559822 UBR2Q8IWV8 1755 aa16.43■□□□□ 0.22
SPG11-219ENST00000559822 KIAA1551Q9HCM1 1747 aa16.42■□□□□ 0.22
SPG11-219ENST00000559822 COL15A1P39059 1388 aa16.42■□□□□ 0.22
SPG11-219ENST00000559822 STARD3NLO95772 234 aa16.42■□□□□ 0.22
SPG11-219ENST00000559822 FKBP8Q14318 412 aa16.42■□□□□ 0.22
SPG11-219ENST00000559822 N4BP2Q86UW6 1770 aaPredicted RBP16.41■□□□□ 0.22
SPG11-219ENST00000559822 ADCY9O60503 1353 aa16.41■□□□□ 0.22
SPG11-219ENST00000559822 A0A0G2JLW4 131 aa16.41■□□□□ 0.22
SPG11-219ENST00000559822 TEX13AQ9BXU3 409 aaPredicted RBP16.41■□□□□ 0.22
SPG11-219ENST00000559822 GPBP1L1Q9HC44 474 aaPredicted RBP16.41■□□□□ 0.22
SPG11-219ENST00000559822 BCS1LQ9Y276 419 aa16.41■□□□□ 0.22
SPG11-219ENST00000559822 DPEP1P16444 411 aa16.4■□□□□ 0.22
SPG11-219ENST00000559822 PPP2R1AP30153 589 aa16.4■□□□□ 0.22
SPG11-219ENST00000559822 PRKAR2BP31323 418 aa16.4■□□□□ 0.22
SPG11-219ENST00000559822 ZNF790Q6PG37 636 aa16.4■□□□□ 0.22
SPG11-219ENST00000559822 RSPH6AQ9H0K4 717 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms