RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ESCO1Q5FWF5 840 aa8.91□□□□□ -0.98
SCFD1-219ENST00000556413 ACDQ96AP0 544 aa8.91□□□□□ -0.98
SCFD1-219ENST00000556413 SCARF2Q96GP6 870 aaPredicted RBP8.91□□□□□ -0.98
SCFD1-219ENST00000556413 GPAMQ9HCL2 828 aa8.91□□□□□ -0.98
SCFD1-219ENST00000556413 ABL2P42684 1182 aa8.9□□□□□ -0.98
SCFD1-219ENST00000556413 ENAMQ9NRM1 1142 aa8.9□□□□□ -0.98
SCFD1-219ENST00000556413 A0A1B0GTH6 734 aa8.89□□□□□ -0.99
SCFD1-219ENST00000556413 BCRP11274 1271 aa8.89□□□□□ -0.99
SCFD1-219ENST00000556413 MX2P20592 715 aa8.89□□□□□ -0.99
SCFD1-219ENST00000556413 C4orf17Q53FE4 359 aa8.89□□□□□ -0.99
SCFD1-219ENST00000556413 OXLD1Q5BKU9 147 aa8.89□□□□□ -0.99
SCFD1-219ENST00000556413 GNASQ5JWF2 1037 aa8.89□□□□□ -0.99
SCFD1-219ENST00000556413 TMEM214Q6NUQ4 689 aaKnown RBP8.89□□□□□ -0.99
SCFD1-219ENST00000556413 ETNK1Q9HBU6 452 aa8.89□□□□□ -0.99
SCFD1-219ENST00000556413 GTF2E1P29083 439 aaPredicted RBP8.88□□□□□ -0.99
SCFD1-219ENST00000556413 KANK3Q6NY19 840 aa8.88□□□□□ -0.99
SCFD1-219ENST00000556413 CFHR5Q9BXR6 569 aa8.87□□□□□ -0.99
SCFD1-219ENST00000556413 DNMT3AQ9Y6K1 912 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-219ENST00000556413 SCNN1DP51172 638 aa8.86□□□□□ -0.99
SCFD1-219ENST00000556413 UBAP2LQ14157 1087 aaKnown RBP8.86□□□□□ -0.99
SCFD1-219ENST00000556413 TLR1Q15399 786 aa8.86□□□□□ -0.99
SCFD1-219ENST00000556413 WASHC4Q2M389 1173 aa8.86□□□□□ -0.99
SCFD1-219ENST00000556413 PPARGC1BQ86YN6 1023 aaKnown RBP8.86□□□□□ -0.99
SCFD1-219ENST00000556413 SIRT1Q96EB6 747 aa8.86□□□□□ -0.99
SCFD1-219ENST00000556413 NSFL1CQ9UNZ2 370 aaKnown RBP8.86□□□□□ -0.99
SCFD1-219ENST00000556413 MSX1P28360 303 aa8.85□□□□□ -0.99
SCFD1-219ENST00000556413 MCM6Q14566 821 aa8.85□□□□□ -0.99
SCFD1-219ENST00000556413 NEDD1Q8NHV4 660 aa8.85□□□□□ -0.99
SCFD1-219ENST00000556413 RHBDD1Q8TEB9 315 aa8.85□□□□□ -0.99
SCFD1-219ENST00000556413 RUBCNLQ9H714 662 aa8.85□□□□□ -0.99
SCFD1-219ENST00000556413 LRRC4BQ9NT99 713 aa8.85□□□□□ -0.99
SCFD1-219ENST00000556413 CNTNAP5Q8WYK1 1306 aa8.84□□□□□ -0.99
SCFD1-219ENST00000556413 MAP2K3P46734 347 aa8.84□□□□□ -0.99
SCFD1-219ENST00000556413 LBRQ14739 615 aaKnown RBP8.84□□□□□ -0.99
SCFD1-219ENST00000556413 MAP7D1Q3KQU3 841 aa8.84□□□□□ -0.99
SCFD1-219ENST00000556413 PLPP7Q8NBV4 271 aa8.84□□□□□ -0.99
SCFD1-219ENST00000556413 INHAP05111 366 aa8.83□□□□□ -1
SCFD1-219ENST00000556413 CSB-PGBD3P0DP91 1061 aa8.83□□□□□ -1
SCFD1-219ENST00000556413 GDF10P55107 478 aa8.83□□□□□ -1
SCFD1-219ENST00000556413 SEMA3FQ13275 785 aa8.83□□□□□ -1
SCFD1-219ENST00000556413 PGBD3Q8N328 593 aa8.83□□□□□ -1
SCFD1-219ENST00000556413 OXCT2Q9BYC2 517 aaPredicted RBP8.83□□□□□ -1
SCFD1-219ENST00000556413 PHF24Q9UPV7 400 aa8.83□□□□□ -1
SCFD1-219ENST00000556413 OIP5O43482 229 aa8.82□□□□□ -1
SCFD1-219ENST00000556413 SUZ12Q15022 739 aaKnown RBP8.82□□□□□ -1
SCFD1-219ENST00000556413 GPAT2Q6NUI2 795 aa8.82□□□□□ -1
SCFD1-219ENST00000556413 BEND7Q8N7W2 519 aaPredicted RBP8.82□□□□□ -1
SCFD1-219ENST00000556413 KLRG1Q96E93 195 aa8.82□□□□□ -1
SCFD1-219ENST00000556413 PHF20L1A8MW92 1017 aa8.81□□□□□ -1
SCFD1-219ENST00000556413 SOX11P35716 441 aa8.81□□□□□ -1
SCFD1-219ENST00000556413 EFHC2Q5JST6 749 aa8.81□□□□□ -1
SCFD1-219ENST00000556413 PRKCSHP14314 528 aaPredicted RBP8.8□□□□□ -1
SCFD1-219ENST00000556413 PLA2G4AP47712 749 aa8.8□□□□□ -1
SCFD1-219ENST00000556413 CRISPLD1Q9H336 500 aa8.8□□□□□ -1
SCFD1-219ENST00000556413 NDFIP2Q9NV92 336 aa8.8□□□□□ -1
SCFD1-219ENST00000556413 COG6Q9Y2V7 657 aa8.8□□□□□ -1
SCFD1-219ENST00000556413 LOC100996750A0A140TA64 210 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 PIK3CDO00329 1044 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 BNIP3LO60238 219 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 SMTNP53814 917 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 FOXK2Q01167 660 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 C1orf229Q6ZS94 237 aaPredicted RBP8.79□□□□□ -1
SCFD1-219ENST00000556413 PODNQ7Z5L7 613 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 ABHD17AQ96GS6 310 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 KRTAP4-6Q9BYQ5 205 aa8.79□□□□□ -1
SCFD1-219ENST00000556413 ATXN7L1Q9ULK2 861 aaPredicted RBP8.79□□□□□ -1
SCFD1-219ENST00000556413 TMEM229AB2RXF0 380 aa8.78□□□□□ -1
SCFD1-219ENST00000556413 IGHA1P01876 353 aa8.78□□□□□ -1
SCFD1-219ENST00000556413 TBC1D9Q6ZT07 1266 aa8.78□□□□□ -1
SCFD1-219ENST00000556413 DCAF5Q96JK2 942 aa8.78□□□□□ -1
SCFD1-219ENST00000556413 NIFKQ9BYG3 293 aaKnown RBP8.78□□□□□ -1
SCFD1-219ENST00000556413 SHISA8B8ZZ34 492 aa8.77□□□□□ -1.01
SCFD1-219ENST00000556413 C2CD2LO14523 706 aa8.77□□□□□ -1.01
SCFD1-219ENST00000556413 ATP4AP20648 1035 aa8.77□□□□□ -1.01
SCFD1-219ENST00000556413 ZNF295-AS1Q8N0V1 137 aa8.77□□□□□ -1.01
SCFD1-219ENST00000556413 GALNT6Q8NCL4 622 aa8.77□□□□□ -1.01
SCFD1-219ENST00000556413 SLC4A9Q96Q91 983 aa8.77□□□□□ -1.01
SCFD1-219ENST00000556413 SERTAD1Q9UHV2 236 aa8.77□□□□□ -1.01
SCFD1-219ENST00000556413 BMP4P12644 408 aa8.76□□□□□ -1.01
SCFD1-219ENST00000556413 FGFR3P22607 806 aa8.76□□□□□ -1.01
SCFD1-219ENST00000556413 SNRPNP63162 240 aaKnown RBP8.76□□□□□ -1.01
SCFD1-219ENST00000556413 CTBSQ01459 385 aa8.76□□□□□ -1.01
SCFD1-219ENST00000556413 DNAAF2Q9NVR5 837 aaKnown RBP8.76□□□□□ -1.01
SCFD1-219ENST00000556413 GDF2Q9UK05 429 aaPredicted RBP8.76□□□□□ -1.01
SCFD1-219ENST00000556413 PCDHGA11Q9Y5H2 935 aa8.76□□□□□ -1.01
SCFD1-219ENST00000556413 PLA2G4EQ3MJ16 856 aa8.75□□□□□ -1.01
SCFD1-219ENST00000556413 GOLGA6L1Q8N7Z2 621 aa8.75□□□□□ -1.01
SCFD1-219ENST00000556413 C1orf216Q8TAB5 229 aa8.75□□□□□ -1.01
SCFD1-219ENST00000556413 AIDAQ96BJ3 306 aa8.75□□□□□ -1.01
SCFD1-219ENST00000556413 ZCCHC2Q9C0B9 1178 aaKnown RBP8.75□□□□□ -1.01
SCFD1-219ENST00000556413 ALG2Q9H553 416 aa8.75□□□□□ -1.01
SCFD1-219ENST00000556413 IQSEC3Q9UPP2 1182 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-219ENST00000556413 USP3Q9Y6I4 520 aa8.75□□□□□ -1.01
SCFD1-219ENST00000556413 A6NJY4 79 aa8.74□□□□□ -1.01
SCFD1-219ENST00000556413 CDK2AP1O14519 115 aa8.74□□□□□ -1.01
SCFD1-219ENST00000556413 ITGB2P05107 769 aa8.74□□□□□ -1.01
SCFD1-219ENST00000556413 MTFR1Q15390 333 aa8.74□□□□□ -1.01
SCFD1-219ENST00000556413 EDARADDQ8WWZ3 215 aa8.74□□□□□ -1.01
SCFD1-219ENST00000556413 POM121Q96HA1 1249 aa8.74□□□□□ -1.01
SCFD1-219ENST00000556413 PCDHGC4Q9Y5F7 938 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms