RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 SUZ12Q15022 739 aaKnown RBP7.07□□□□□ -1.28
ATXN3-240ENST00000556339 NUCKS1Q9H1E3 243 aaKnown RBP7.07□□□□□ -1.28
ATXN3-240ENST00000556339 PHF20L1A8MW92 1017 aa7.06□□□□□ -1.28
ATXN3-240ENST00000556339 GRIP2Q9C0E4 1043 aa7.06□□□□□ -1.28
ATXN3-240ENST00000556339 OSBPL3Q9H4L5 887 aa7.06□□□□□ -1.28
ATXN3-240ENST00000556339 GPAMQ9HCL2 828 aa7.06□□□□□ -1.28
ATXN3-240ENST00000556339 PRM3Q9NNZ6 103 aa7.06□□□□□ -1.28
ATXN3-240ENST00000556339 KIF21AQ7Z4S6 1674 aa7.06□□□□□ -1.28
ATXN3-240ENST00000556339 GNRH1P01148 92 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 F11P03951 625 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 BCRP11274 1271 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 PHKA2P46019 1235 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 BRPF1P55201 1214 aaPredicted RBP7.05□□□□□ -1.28
ATXN3-240ENST00000556339 FOXK2Q01167 660 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 WDR44Q5JSH3 913 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 GNASQ5JWF2 1037 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 TMEM214Q6NUQ4 689 aaKnown RBP7.05□□□□□ -1.28
ATXN3-240ENST00000556339 MTMR14Q8NCE2 650 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 CNKSR1Q969H4 720 aa7.05□□□□□ -1.28
ATXN3-240ENST00000556339 SPATA31C2B4DYI2 1134 aa7.04□□□□□ -1.28
ATXN3-240ENST00000556339 TRAK2O60296 914 aa7.04□□□□□ -1.28
ATXN3-240ENST00000556339 IGHA1P01876 353 aa7.04□□□□□ -1.28
ATXN3-240ENST00000556339 CSB-PGBD3P0DP91 1061 aa7.04□□□□□ -1.28
ATXN3-240ENST00000556339 PGBD3Q8N328 593 aa7.04□□□□□ -1.28
ATXN3-240ENST00000556339 BEND7Q8N7W2 519 aaPredicted RBP7.04□□□□□ -1.28
ATXN3-240ENST00000556339 ZSCAN10Q96SZ4 725 aaPredicted RBP7.04□□□□□ -1.28
ATXN3-240ENST00000556339 SNRKQ9NRH2 765 aa7.04□□□□□ -1.28
ATXN3-240ENST00000556339 PHF24Q9UPV7 400 aa7.04□□□□□ -1.28
ATXN3-240ENST00000556339 SOCS7O14512 581 aa7.03□□□□□ -1.28
ATXN3-240ENST00000556339 ESYT1Q9BSJ8 1104 aa7.03□□□□□ -1.28
ATXN3-240ENST00000556339 CEP126Q9P2H0 1117 aa7.03□□□□□ -1.28
ATXN3-240ENST00000556339 CNTNAP5Q8WYK1 1306 aa7.02□□□□□ -1.28
ATXN3-240ENST00000556339 EIF4G2P78344 907 aaKnown RBP eCLIP7.02□□□□□ -1.29
ATXN3-240ENST00000556339 CENPCQ03188 943 aa7.02□□□□□ -1.29
ATXN3-240ENST00000556339 SLFNL1Q499Z3 407 aa7.02□□□□□ -1.29
ATXN3-240ENST00000556339 ESCO1Q5FWF5 840 aa7.02□□□□□ -1.29
ATXN3-240ENST00000556339 ACDQ96AP0 544 aa7.02□□□□□ -1.29
ATXN3-240ENST00000556339 CDCA7Q9BWT1 371 aaPredicted RBP7.02□□□□□ -1.29
ATXN3-240ENST00000556339 DOLKQ9UPQ8 538 aa7.02□□□□□ -1.29
ATXN3-240ENST00000556339 MRC2Q9UBG0 1479 aa7.02□□□□□ -1.29
ATXN3-240ENST00000556339 THOC2Q8NI27 1593 aaKnown RBP7.02□□□□□ -1.29
ATXN3-240ENST00000556339 RSF1Q96T23 1441 aaPredicted RBP7.01□□□□□ -1.29
ATXN3-240ENST00000556339 A0A1B0GTH6 734 aa7.01□□□□□ -1.29
ATXN3-240ENST00000556339 IL2RAP01589 272 aa7.01□□□□□ -1.29
ATXN3-240ENST00000556339 MAP2K3P46734 347 aa7.01□□□□□ -1.29
ATXN3-240ENST00000556339 FANCD2Q9BXW9 1451 aa7□□□□□ -1.29
ATXN3-240ENST00000556339 CEP164Q9UPV0 1460 aa7□□□□□ -1.29
ATXN3-240ENST00000556339 OXLD1Q5BKU9 147 aa7□□□□□ -1.29
ATXN3-240ENST00000556339 EFHC2Q5JST6 749 aa7□□□□□ -1.29
ATXN3-240ENST00000556339 CCDC85AQ96PX6 553 aaPredicted RBP7□□□□□ -1.29
ATXN3-240ENST00000556339 TBC1D2BQ9UPU7 963 aa7□□□□□ -1.29
ATXN3-240ENST00000556339 USP4Q13107 963 aa6.99□□□□□ -1.29
ATXN3-240ENST00000556339 RNF135Q8IUD6 432 aa6.99□□□□□ -1.29
ATXN3-240ENST00000556339 OXCT2Q9BYC2 517 aaPredicted RBP6.99□□□□□ -1.29
ATXN3-240ENST00000556339 RUBCNLQ9H714 662 aa6.99□□□□□ -1.29
ATXN3-240ENST00000556339 RRAGCQ9HB90 399 aa6.99□□□□□ -1.29
ATXN3-240ENST00000556339 LOC100996750A0A140TA64 210 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 OIP5O43482 229 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 GPR37L1O60883 481 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 TLR1Q15399 786 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 GALNT6Q8NCL4 622 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 SIRT1Q96EB6 747 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 CFHR5Q9BXR6 569 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 KRTAP4-6Q9BYQ5 205 aa6.98□□□□□ -1.29
ATXN3-240ENST00000556339 MSTNO14793 375 aa6.97□□□□□ -1.29
ATXN3-240ENST00000556339 AMPD1P23109 780 aa6.97□□□□□ -1.29
ATXN3-240ENST00000556339 C4orf17Q53FE4 359 aa6.97□□□□□ -1.29
ATXN3-240ENST00000556339 XAGE2Q96GT9 111 aa6.97□□□□□ -1.29
ATXN3-240ENST00000556339 DCAF5Q96JK2 942 aa6.97□□□□□ -1.29
ATXN3-240ENST00000556339 LRRC4BQ9NT99 713 aa6.97□□□□□ -1.29
ATXN3-240ENST00000556339 BMP4P12644 408 aa6.96□□□□□ -1.3
ATXN3-240ENST00000556339 LBRQ14739 615 aaKnown RBP6.96□□□□□ -1.3
ATXN3-240ENST00000556339 PLA2G4EQ3MJ16 856 aa6.96□□□□□ -1.3
ATXN3-240ENST00000556339 RHBDD1Q8TEB9 315 aa6.96□□□□□ -1.3
ATXN3-240ENST00000556339 GDF2Q9UK05 429 aaPredicted RBP6.96□□□□□ -1.3
ATXN3-240ENST00000556339 CFTRP13569 1480 aa6.96□□□□□ -1.3
ATXN3-240ENST00000556339 MSX1P28360 303 aa6.95□□□□□ -1.3
ATXN3-240ENST00000556339 PLA2G4AP47712 749 aa6.95□□□□□ -1.3
ATXN3-240ENST00000556339 TBC1D9Q6ZT07 1266 aa6.95□□□□□ -1.3
ATXN3-240ENST00000556339 FHDC1Q9C0D6 1143 aaPredicted RBP6.95□□□□□ -1.3
ATXN3-240ENST00000556339 ETNK1Q9HBU6 452 aa6.95□□□□□ -1.3
ATXN3-240ENST00000556339 MKL2Q9ULH7 1088 aa6.95□□□□□ -1.3
ATXN3-240ENST00000556339 ATXN7L1Q9ULK2 861 aaPredicted RBP6.95□□□□□ -1.3
ATXN3-240ENST00000556339 TOP2AP11388 1531 aaKnown RBP6.95□□□□□ -1.3
ATXN3-240ENST00000556339 ABL2P42684 1182 aa6.94□□□□□ -1.3
ATXN3-240ENST00000556339 VAC14Q08AM6 782 aa6.94□□□□□ -1.3
ATXN3-240ENST00000556339 GOLGA6L1Q8N7Z2 621 aa6.94□□□□□ -1.3
ATXN3-240ENST00000556339 AIDAQ96BJ3 306 aa6.94□□□□□ -1.3
ATXN3-240ENST00000556339 KLRG1Q96E93 195 aa6.94□□□□□ -1.3
ATXN3-240ENST00000556339 ABHD17AQ96GS6 310 aa6.94□□□□□ -1.3
ATXN3-240ENST00000556339 WDR62O43379 1518 aa6.94□□□□□ -1.3
ATXN3-240ENST00000556339 STAU1O95793 577 aaKnown RBP6.93□□□□□ -1.3
ATXN3-240ENST00000556339 FGFR3P22607 806 aa6.93□□□□□ -1.3
ATXN3-240ENST00000556339 TSGA10IPQ3SY00 556 aa6.93□□□□□ -1.3
ATXN3-240ENST00000556339 FIGNL1Q6PIW4 674 aa6.93□□□□□ -1.3
ATXN3-240ENST00000556339 PPARGC1BQ86YN6 1023 aaKnown RBP6.93□□□□□ -1.3
ATXN3-240ENST00000556339 EDARADDQ8WWZ3 215 aa6.93□□□□□ -1.3
ATXN3-240ENST00000556339 SPOCK3Q9BQ16 436 aa6.93□□□□□ -1.3
ATXN3-240ENST00000556339 CCDC88BA6NC98 1476 aa6.92□□□□□ -1.3
ATXN3-240ENST00000556339 SHISA8B8ZZ34 492 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms