RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ATP6V1AP38606 617 aa18.2■□□□□ 0.5
VPS29-211ENST00000553128 TGFB2P61812 414 aa18.2■□□□□ 0.5
VPS29-211ENST00000553128 C10orf71Q711Q0 1435 aa18.2■□□□□ 0.5
VPS29-211ENST00000553128 JMYQ8N9B5 988 aa18.19■□□□□ 0.5
VPS29-211ENST00000553128 RBM46Q8TBY0 533 aaKnown RBP18.19■□□□□ 0.5
VPS29-211ENST00000553128 EMILIN1Q9Y6C2 1016 aa18.19■□□□□ 0.5
VPS29-211ENST00000553128 FCHSD2O94868 740 aa18.18■□□□□ 0.5
VPS29-211ENST00000553128 C9orf131Q5VYM1 1079 aa18.18■□□□□ 0.5
VPS29-211ENST00000553128 ATG3Q9NT62 314 aa18.18■□□□□ 0.5
VPS29-211ENST00000553128 NCAPD2Q15021 1401 aa18.17■□□□□ 0.5
VPS29-211ENST00000553128 KCNA3P22001 575 aa18.17■□□□□ 0.5
VPS29-211ENST00000553128 SLC4A9Q96Q91 983 aa18.17■□□□□ 0.5
VPS29-211ENST00000553128 TMOD3Q9NYL9 352 aa18.17■□□□□ 0.5
VPS29-211ENST00000553128 KCPQ6ZWJ8 1503 aa18.16■□□□□ 0.5
VPS29-211ENST00000553128 TMF1P82094 1093 aa18.15■□□□□ 0.5
VPS29-211ENST00000553128 BRCA1P38398 1863 aaKnown RBP18.14■□□□□ 0.49
VPS29-211ENST00000553128 GYS1P13807 737 aa18.14■□□□□ 0.49
VPS29-211ENST00000553128 TRAPPC3LQ5T215 181 aa18.14■□□□□ 0.49
VPS29-211ENST00000553128 ARHGEF1Q92888 912 aaKnown RBP18.14■□□□□ 0.49
VPS29-211ENST00000553128 SPG7Q9UQ90 795 aa18.14■□□□□ 0.49
VPS29-211ENST00000553128 KDRP35968 1356 aa18.14■□□□□ 0.49
VPS29-211ENST00000553128 C4AP0C0L4 1744 aa18.13■□□□□ 0.49
VPS29-211ENST00000553128 PHKG2P15735 406 aa18.13■□□□□ 0.49
VPS29-211ENST00000553128 C16orf71Q8IYS4 520 aaPredicted RBP18.13■□□□□ 0.49
VPS29-211ENST00000553128 TNS4Q8IZW8 715 aa18.13■□□□□ 0.49
VPS29-211ENST00000553128 NLGN1Q8N2Q7 840 aa18.13■□□□□ 0.49
VPS29-211ENST00000553128 CCDC87Q9NVE4 849 aa18.13■□□□□ 0.49
VPS29-211ENST00000553128 RTCBQ9Y3I0 505 aaKnown RBP18.13■□□□□ 0.49
VPS29-211ENST00000553128 KIF24Q5T7B8 1368 aa18.13■□□□□ 0.49
VPS29-211ENST00000553128 FSTL1Q12841 308 aa18.12■□□□□ 0.49
VPS29-211ENST00000553128 RRAGCQ9HB90 399 aa18.12■□□□□ 0.49
VPS29-211ENST00000553128 KIF20BQ96Q89 1820 aa18.12■□□□□ 0.49
VPS29-211ENST00000553128 PPM1GO15355 546 aaPredicted RBP18.11■□□□□ 0.49
VPS29-211ENST00000553128 PRELPP51888 382 aa18.11■□□□□ 0.49
VPS29-211ENST00000553128 EYA1Q99502 592 aa18.11■□□□□ 0.49
VPS29-211ENST00000553128 PLEKHG2Q9H7P9 1386 aa18.1■□□□□ 0.49
VPS29-211ENST00000553128 TONSLQ96HA7 1378 aa18.09■□□□□ 0.49
VPS29-211ENST00000553128 IFNL2Q8IZJ0 200 aa18.09■□□□□ 0.49
VPS29-211ENST00000553128 DCAF5Q96JK2 942 aa18.09■□□□□ 0.49
VPS29-211ENST00000553128 RBM42Q9BTD8 480 aaKnown RBP18.09■□□□□ 0.49
VPS29-211ENST00000553128 CARD14Q9BXL6 1004 aa18.09■□□□□ 0.49
VPS29-211ENST00000553128 RNF181Q9P0P0 153 aa18.09■□□□□ 0.49
VPS29-211ENST00000553128 PARP3Q9Y6F1 533 aa18.09■□□□□ 0.49
VPS29-211ENST00000553128 ARFGEF1Q9Y6D6 1849 aa18.08■□□□□ 0.48
VPS29-211ENST00000553128 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.08■□□□□ 0.48
VPS29-211ENST00000553128 PIM2Q9P1W9 311 aa18.08■□□□□ 0.48
VPS29-211ENST00000553128 KDM2BQ8NHM5 1336 aa18.07■□□□□ 0.48
VPS29-211ENST00000553128 RFC4P35249 363 aa18.07■□□□□ 0.48
VPS29-211ENST00000553128 RC3H1Q5TC82 1133 aaKnown RBP18.07■□□□□ 0.48
VPS29-211ENST00000553128 COL5A3P25940 1745 aaPredicted RBP18.06■□□□□ 0.48
VPS29-211ENST00000553128 RPS6KA4O75676 772 aa18.06■□□□□ 0.48
VPS29-211ENST00000553128 ADRA2BP18089 450 aa18.06■□□□□ 0.48
VPS29-211ENST00000553128 CHRNA5P30532 468 aa18.06■□□□□ 0.48
VPS29-211ENST00000553128 DDR1Q08345 913 aa18.06■□□□□ 0.48
VPS29-211ENST00000553128 DALRD3Q5D0E6 543 aaKnown RBP18.06■□□□□ 0.48
VPS29-211ENST00000553128 SRP68Q9UHB9 627 aaKnown RBP18.06■□□□□ 0.48
VPS29-211ENST00000553128 WASHC2AQ641Q2 1341 aa18.05■□□□□ 0.48
VPS29-211ENST00000553128 CNTNAP4Q9C0A0 1308 aa18.05■□□□□ 0.48
VPS29-211ENST00000553128 FKBP8Q14318 412 aa18.05■□□□□ 0.48
VPS29-211ENST00000553128 MYH14Q7Z406 1995 aaKnown RBP18.04■□□□□ 0.48
VPS29-211ENST00000553128 ANKRD26Q9UPS8 1709 aa18.04■□□□□ 0.48
VPS29-211ENST00000553128 SMC1BQ8NDV3 1235 aa18.04■□□□□ 0.48
VPS29-211ENST00000553128 ZNF831Q5JPB2 1677 aa18.03■□□□□ 0.48
VPS29-211ENST00000553128 TNRC6CQ9HCJ0 1690 aaKnown RBP18.03■□□□□ 0.48
VPS29-211ENST00000553128 HSPA1AP0DMV8 641 aaKnown RBP18.03■□□□□ 0.48
VPS29-211ENST00000553128 HSPA1BP0DMV9 641 aaKnown RBP18.03■□□□□ 0.48
VPS29-211ENST00000553128 RASSF7Q02833 373 aa18.03■□□□□ 0.48
VPS29-211ENST00000553128 SLC24A1O60721 1099 aa18.02■□□□□ 0.48
VPS29-211ENST00000553128 SBF1O95248 1867 aa18.01■□□□□ 0.47
VPS29-211ENST00000553128 ERVV-2B6SEH9 535 aa18.01■□□□□ 0.47
VPS29-211ENST00000553128 EIF4A2Q14240 407 aaKnown RBP18.01■□□□□ 0.47
VPS29-211ENST00000553128 POLKQ9UBT6 870 aa18.01■□□□□ 0.47
VPS29-211ENST00000553128 USP42Q9H9J4 1324 aaKnown RBP18■□□□□ 0.47
VPS29-211ENST00000553128 KDM6AO15550 1401 aaPredicted RBP18■□□□□ 0.47
VPS29-211ENST00000553128 PTCD1O75127 700 aaKnown RBP17.99■□□□□ 0.47
VPS29-211ENST00000553128 CRKLP46109 303 aaKnown RBP17.99■□□□□ 0.47
VPS29-211ENST00000553128 POLRMTO00411 1230 aaKnown RBP17.98■□□□□ 0.47
VPS29-211ENST00000553128 TM4SF1P30408 202 aa17.96■□□□□ 0.47
VPS29-211ENST00000553128 ADAMTS7Q9UKP4 1686 aa17.96■□□□□ 0.47
VPS29-211ENST00000553128 GLTPD2A6NH11 291 aa17.95■□□□□ 0.46
VPS29-211ENST00000553128 TNNT2P45379 298 aaPredicted RBP17.95■□□□□ 0.46
VPS29-211ENST00000553128 CABP4P57796 275 aa17.95■□□□□ 0.46
VPS29-211ENST00000553128 POTECB2RU33 542 aa17.94■□□□□ 0.46
VPS29-211ENST00000553128 VEGFAP15692 232 aaPredicted RBP17.94■□□□□ 0.46
VPS29-211ENST00000553128 ZNF530Q6P9A1 599 aaPredicted RBP17.94■□□□□ 0.46
VPS29-211ENST00000553128 INTS5Q6P9B9 1019 aaKnown RBP17.94■□□□□ 0.46
VPS29-211ENST00000553128 TJP1Q07157 1748 aa17.94■□□□□ 0.46
VPS29-211ENST00000553128 HSP90AB1P08238 724 aaKnown RBP17.93■□□□□ 0.46
VPS29-211ENST00000553128 LMNB1P20700 586 aa17.93■□□□□ 0.46
VPS29-211ENST00000553128 USPL1Q5W0Q7 1092 aa17.93■□□□□ 0.46
VPS29-211ENST00000553128 ZC3H4Q9UPT8 1303 aaKnown RBP17.93■□□□□ 0.46
VPS29-211ENST00000553128 NFATC2IPQ8NCF5 419 aa17.92■□□□□ 0.46
VPS29-211ENST00000553128 PLEKHO1Q53GL0 409 aaPredicted RBP17.91■□□□□ 0.46
VPS29-211ENST00000553128 CDCA8Q53HL2 280 aa17.91■□□□□ 0.46
VPS29-211ENST00000553128 TIAM2Q8IVF5 1701 aa17.9■□□□□ 0.46
VPS29-211ENST00000553128 NFKBIEO00221 500 aa17.9■□□□□ 0.46
VPS29-211ENST00000553128 MTHFSP49914 203 aa17.9■□□□□ 0.46
VPS29-211ENST00000553128 NFIXQ14938 502 aa17.9■□□□□ 0.46
VPS29-211ENST00000553128 AEBP1Q8IUX7 1158 aa17.9■□□□□ 0.46
VPS29-211ENST00000553128 DNAJC10Q8IXB1 793 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms