RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EYA1Q99502 592 aa23.42■■□□□ 1.34
VPS29-204ENST00000548259 CCDC87Q9NVE4 849 aa23.42■■□□□ 1.34
VPS29-204ENST00000548259 UBR3Q6ZT12 1888 aa23.42■■□□□ 1.34
VPS29-204ENST00000548259 TOGARAM1Q9Y4F4 1720 aa23.42■■□□□ 1.34
VPS29-204ENST00000548259 CARD14Q9BXL6 1004 aa23.41■■□□□ 1.34
VPS29-204ENST00000548259 ITGB4P16144 1822 aa23.4■■□□□ 1.34
VPS29-204ENST00000548259 KIF20BQ96Q89 1820 aa23.4■■□□□ 1.34
VPS29-204ENST00000548259 HSP90AB1P08238 724 aaKnown RBP23.4■■□□□ 1.34
VPS29-204ENST00000548259 ARHGAP27Q6ZUM4 889 aa23.4■■□□□ 1.34
VPS29-204ENST00000548259 ATG3Q9NT62 314 aa23.4■■□□□ 1.34
VPS29-204ENST00000548259 PLEKHG2Q9H7P9 1386 aa23.4■■□□□ 1.34
VPS29-204ENST00000548259 RFC4P35249 363 aa23.38■■□□□ 1.33
VPS29-204ENST00000548259 RC3H1Q5TC82 1133 aaKnown RBP23.38■■□□□ 1.33
VPS29-204ENST00000548259 RBM42Q9BTD8 480 aaKnown RBP23.38■■□□□ 1.33
VPS29-204ENST00000548259 PARP3Q9Y6F1 533 aa23.38■■□□□ 1.33
VPS29-204ENST00000548259 PXDNLA1KZ92 1463 aa23.37■■□□□ 1.33
VPS29-204ENST00000548259 A0A0G2JLW4 131 aa23.37■■□□□ 1.33
VPS29-204ENST00000548259 ERVV-2B6SEH9 535 aa23.37■■□□□ 1.33
VPS29-204ENST00000548259 FCHSD2O94868 740 aa23.37■■□□□ 1.33
VPS29-204ENST00000548259 C16orf71Q8IYS4 520 aaPredicted RBP23.37■■□□□ 1.33
VPS29-204ENST00000548259 CICQ96RK0 1608 aaPredicted RBP23.37■■□□□ 1.33
VPS29-204ENST00000548259 DCAF5Q96JK2 942 aa23.35■■□□□ 1.33
VPS29-204ENST00000548259 MAP2P11137 1827 aaKnown RBP23.34■■□□□ 1.33
VPS29-204ENST00000548259 ARHGEF1Q92888 912 aaKnown RBP23.34■■□□□ 1.33
VPS29-204ENST00000548259 POLKQ9UBT6 870 aa23.34■■□□□ 1.33
VPS29-204ENST00000548259 CNTNAP4Q9C0A0 1308 aa23.33■■□□□ 1.33
VPS29-204ENST00000548259 C10orf71Q711Q0 1435 aa23.33■■□□□ 1.33
VPS29-204ENST00000548259 RPS6KA4O75676 772 aa23.32■■□□□ 1.32
VPS29-204ENST00000548259 DPEP1P16444 411 aa23.32■■□□□ 1.32
VPS29-204ENST00000548259 PLEKHO1Q53GL0 409 aaPredicted RBP23.32■■□□□ 1.32
VPS29-204ENST00000548259 KDRP35968 1356 aa23.31■■□□□ 1.32
VPS29-204ENST00000548259 GYS1P13807 737 aa23.31■■□□□ 1.32
VPS29-204ENST00000548259 CABP4P57796 275 aa23.31■■□□□ 1.32
VPS29-204ENST00000548259 EIF4A2Q14240 407 aaKnown RBP23.31■■□□□ 1.32
VPS29-204ENST00000548259 RBM46Q8TBY0 533 aaKnown RBP23.3■■□□□ 1.32
VPS29-204ENST00000548259 PIM2Q9P1W9 311 aa23.3■■□□□ 1.32
VPS29-204ENST00000548259 KDM2BQ8NHM5 1336 aa23.3■■□□□ 1.32
VPS29-204ENST00000548259 AMOTQ4VCS5 1084 aa23.29■■□□□ 1.32
VPS29-204ENST00000548259 C9orf131Q5VYM1 1079 aa23.29■■□□□ 1.32
VPS29-204ENST00000548259 NMRK2Q9NPI5 230 aa23.29■■□□□ 1.32
VPS29-204ENST00000548259 TNNT2P45379 298 aaPredicted RBP23.28■■□□□ 1.32
VPS29-204ENST00000548259 DNAJC5GQ8N7S2 189 aa23.28■■□□□ 1.32
VPS29-204ENST00000548259 FSTL1Q12841 308 aa23.27■■□□□ 1.32
VPS29-204ENST00000548259 DALRD3Q5D0E6 543 aaKnown RBP23.27■■□□□ 1.32
VPS29-204ENST00000548259 C1orf141Q5JVX7 400 aa23.27■■□□□ 1.32
VPS29-204ENST00000548259 ANKRD26Q9UPS8 1709 aa23.26■■□□□ 1.31
VPS29-204ENST00000548259 ZNF530Q6P9A1 599 aaPredicted RBP23.26■■□□□ 1.31
VPS29-204ENST00000548259 SLC4A9Q96Q91 983 aa23.26■■□□□ 1.31
VPS29-204ENST00000548259 KIF13BQ9NQT8 1826 aa23.25■■□□□ 1.31
VPS29-204ENST00000548259 MTHFSP49914 203 aa23.25■■□□□ 1.31
VPS29-204ENST00000548259 POLR3GLQ9BT43 218 aa23.24■■□□□ 1.31
VPS29-204ENST00000548259 C4AP0C0L4 1744 aa23.23■■□□□ 1.31
VPS29-204ENST00000548259 PTCD1O75127 700 aaKnown RBP23.23■■□□□ 1.31
VPS29-204ENST00000548259 ZNF831Q5JPB2 1677 aa23.22■■□□□ 1.31
VPS29-204ENST00000548259 RNF181Q9P0P0 153 aa23.22■■□□□ 1.31
VPS29-204ENST00000548259 KCNA3P22001 575 aa23.21■■□□□ 1.31
VPS29-204ENST00000548259 CRKLP46109 303 aaKnown RBP23.21■■□□□ 1.31
VPS29-204ENST00000548259 KLRG1Q96E93 195 aa23.21■■□□□ 1.31
VPS29-204ENST00000548259 N4BP2Q86UW6 1770 aaPredicted RBP23.21■■□□□ 1.31
VPS29-204ENST00000548259 USP42Q9H9J4 1324 aaKnown RBP23.2■■□□□ 1.3
VPS29-204ENST00000548259 TIMELESSQ9UNS1 1208 aa23.2■■□□□ 1.3
VPS29-204ENST00000548259 ZPR1O75312 459 aa23.18■■□□□ 1.3
VPS29-204ENST00000548259 NFATC2IPQ8NCF5 419 aa23.18■■□□□ 1.3
VPS29-204ENST00000548259 KIAA1551Q9HCM1 1747 aa23.18■■□□□ 1.3
VPS29-204ENST00000548259 FKBP8Q14318 412 aa23.17■■□□□ 1.3
VPS29-204ENST00000548259 SRP68Q9UHB9 627 aaKnown RBP23.17■■□□□ 1.3
VPS29-204ENST00000548259 KDM6AO15550 1401 aaPredicted RBP23.16■■□□□ 1.3
VPS29-204ENST00000548259 SMC1BQ8NDV3 1235 aa23.16■■□□□ 1.3
VPS29-204ENST00000548259 RRAGCQ9HB90 399 aa23.16■■□□□ 1.3
VPS29-204ENST00000548259 ZC3H4Q9UPT8 1303 aaKnown RBP23.15■■□□□ 1.3
VPS29-204ENST00000548259 JMYQ8N9B5 988 aa23.15■■□□□ 1.3
VPS29-204ENST00000548259 CHRNA5P30532 468 aa23.14■■□□□ 1.29
VPS29-204ENST00000548259 DDR1Q08345 913 aa23.14■■□□□ 1.29
VPS29-204ENST00000548259 COL5A3P25940 1745 aaPredicted RBP23.13■■□□□ 1.29
VPS29-204ENST00000548259 KCPQ6ZWJ8 1503 aa23.13■■□□□ 1.29
VPS29-204ENST00000548259 POLRMTO00411 1230 aaKnown RBP23.12■■□□□ 1.29
VPS29-204ENST00000548259 MORC1Q86VD1 984 aa23.12■■□□□ 1.29
VPS29-204ENST00000548259 HTRA3P83110 453 aa23.11■■□□□ 1.29
VPS29-204ENST00000548259 SULT6B1Q6IMI4 303 aa23.11■■□□□ 1.29
VPS29-204ENST00000548259 WDR90Q96KV7 1748 aa23.11■■□□□ 1.29
VPS29-204ENST00000548259 TM4SF1P30408 202 aa23.1■■□□□ 1.29
VPS29-204ENST00000548259 INTS5Q6P9B9 1019 aaKnown RBP23.1■■□□□ 1.29
VPS29-204ENST00000548259 ARFGEF1Q9Y6D6 1849 aa23.1■■□□□ 1.29
VPS29-204ENST00000548259 LMNB1P20700 586 aa23.09■■□□□ 1.29
VPS29-204ENST00000548259 USPL1Q5W0Q7 1092 aa23.09■■□□□ 1.29
VPS29-204ENST00000548259 AEBP1Q8IUX7 1158 aa23.09■■□□□ 1.29
VPS29-204ENST00000548259 PANK3Q9H999 370 aa23.09■■□□□ 1.29
VPS29-204ENST00000548259 VEGFAP15692 232 aaPredicted RBP23.08■■□□□ 1.29
VPS29-204ENST00000548259 AKAP4Q5JQC9 854 aa23.08■■□□□ 1.29
VPS29-204ENST00000548259 BRCA1P38398 1863 aaKnown RBP23.08■■□□□ 1.29
VPS29-204ENST00000548259 COL13A1Q5TAT6 717 aaPredicted RBP23.07■■□□□ 1.28
VPS29-204ENST00000548259 DNAJC10Q8IXB1 793 aa23.06■■□□□ 1.28
VPS29-204ENST00000548259 TNS4Q8IZW8 715 aa23.06■■□□□ 1.28
VPS29-204ENST00000548259 TTLL6Q8N841 843 aa23.06■■□□□ 1.28
VPS29-204ENST00000548259 NARFQ9UHQ1 456 aa23.06■■□□□ 1.28
VPS29-204ENST00000548259 SOS1Q07889 1333 aaPredicted RBP23.06■■□□□ 1.28
VPS29-204ENST00000548259 GLTPD2A6NH11 291 aa23.05■■□□□ 1.28
VPS29-204ENST00000548259 EIF4G2P78344 907 aaKnown RBP eCLIP23.05■■□□□ 1.28
VPS29-204ENST00000548259 SLC52A2Q9HAB3 445 aa23.05■■□□□ 1.28
VPS29-204ENST00000548259 MYH14Q7Z406 1995 aaKnown RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms