RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 TRAPPC3LQ5T215 181 aa16.92■□□□□ 0.3
SNHG1-216ENST00000541416 NLGN1Q8N2Q7 840 aa16.92■□□□□ 0.3
SNHG1-216ENST00000541416 WWC3Q9ULE0 1092 aa16.92■□□□□ 0.3
SNHG1-216ENST00000541416 ADRA2BP18089 450 aa16.91■□□□□ 0.3
SNHG1-216ENST00000541416 ITPK1Q13572 414 aa16.91■□□□□ 0.3
SNHG1-216ENST00000541416 ERVV-2B6SEH9 535 aa16.9■□□□□ 0.3
SNHG1-216ENST00000541416 SMIM5Q71RC9 77 aa16.9■□□□□ 0.3
SNHG1-216ENST00000541416 ATG3Q9NT62 314 aa16.9■□□□□ 0.3
SNHG1-216ENST00000541416 CCDC87Q9NVE4 849 aa16.89■□□□□ 0.29
SNHG1-216ENST00000541416 POLKQ9UBT6 870 aa16.89■□□□□ 0.29
SNHG1-216ENST00000541416 TIMELESSQ9UNS1 1208 aa16.89■□□□□ 0.29
SNHG1-216ENST00000541416 CICQ96RK0 1608 aaPredicted RBP16.88■□□□□ 0.29
SNHG1-216ENST00000541416 RFC4P35249 363 aa16.88■□□□□ 0.29
SNHG1-216ENST00000541416 RC3H1Q5TC82 1133 aaKnown RBP16.88■□□□□ 0.29
SNHG1-216ENST00000541416 DCAF5Q96JK2 942 aa16.88■□□□□ 0.29
SNHG1-216ENST00000541416 RBM42Q9BTD8 480 aaKnown RBP16.88■□□□□ 0.29
SNHG1-216ENST00000541416 BCS1LQ9Y276 419 aa16.88■□□□□ 0.29
SNHG1-216ENST00000541416 EIF4A2Q14240 407 aaKnown RBP16.87■□□□□ 0.29
SNHG1-216ENST00000541416 PLEKHO1Q53GL0 409 aaPredicted RBP16.87■□□□□ 0.29
SNHG1-216ENST00000541416 PARP3Q9Y6F1 533 aa16.87■□□□□ 0.29
SNHG1-216ENST00000541416 ZNF831Q5JPB2 1677 aa16.87■□□□□ 0.29
SNHG1-216ENST00000541416 KIF13BQ9NQT8 1826 aa16.86■□□□□ 0.29
SNHG1-216ENST00000541416 APLP1P51693 650 aa16.86■□□□□ 0.29
SNHG1-216ENST00000541416 POLR3GLQ9BT43 218 aa16.86■□□□□ 0.29
SNHG1-216ENST00000541416 PXDNLA1KZ92 1463 aa16.86■□□□□ 0.29
SNHG1-216ENST00000541416 KIF3CO14782 793 aa16.85■□□□□ 0.29
SNHG1-216ENST00000541416 TOMM70O94826 608 aa16.85■□□□□ 0.29
SNHG1-216ENST00000541416 TNNT2P45379 298 aaPredicted RBP16.85■□□□□ 0.29
SNHG1-216ENST00000541416 AMOTQ4VCS5 1084 aa16.85■□□□□ 0.29
SNHG1-216ENST00000541416 ARHGAP27Q6ZUM4 889 aa16.85■□□□□ 0.29
SNHG1-216ENST00000541416 CNTNAP4Q9C0A0 1308 aa16.85■□□□□ 0.29
SNHG1-216ENST00000541416 KDRP35968 1356 aa16.85■□□□□ 0.29
SNHG1-216ENST00000541416 RPS6KA4O75676 772 aa16.84■□□□□ 0.29
SNHG1-216ENST00000541416 CABP4P57796 275 aa16.84■□□□□ 0.29
SNHG1-216ENST00000541416 ARHGEF1Q92888 912 aaKnown RBP16.84■□□□□ 0.29
SNHG1-216ENST00000541416 C10orf71Q711Q0 1435 aa16.84■□□□□ 0.29
SNHG1-216ENST00000541416 A0A0G2JLW4 131 aa16.83■□□□□ 0.28
SNHG1-216ENST00000541416 FCHSD2O94868 740 aa16.83■□□□□ 0.28
SNHG1-216ENST00000541416 C1orf141Q5JVX7 400 aa16.83■□□□□ 0.28
SNHG1-216ENST00000541416 N4BP2Q86UW6 1770 aaPredicted RBP16.82■□□□□ 0.28
SNHG1-216ENST00000541416 ZNF530Q6P9A1 599 aaPredicted RBP16.82■□□□□ 0.28
SNHG1-216ENST00000541416 C4AP0C0L4 1744 aa16.82■□□□□ 0.28
SNHG1-216ENST00000541416 GYS1P13807 737 aa16.81■□□□□ 0.28
SNHG1-216ENST00000541416 MTHFSP49914 203 aa16.81■□□□□ 0.28
SNHG1-216ENST00000541416 TRIM26Q12899 539 aaPredicted RBP16.81■□□□□ 0.28
SNHG1-216ENST00000541416 C16orf71Q8IYS4 520 aaPredicted RBP16.81■□□□□ 0.28
SNHG1-216ENST00000541416 COL5A3P25940 1745 aaPredicted RBP16.81■□□□□ 0.28
SNHG1-216ENST00000541416 DPEP1P16444 411 aa16.8■□□□□ 0.28
SNHG1-216ENST00000541416 SLC4A9Q96Q91 983 aa16.8■□□□□ 0.28
SNHG1-216ENST00000541416 KIAA1551Q9HCM1 1747 aa16.79■□□□□ 0.28
SNHG1-216ENST00000541416 PIM2Q9P1W9 311 aa16.79■□□□□ 0.28
SNHG1-216ENST00000541416 PTCD1O75127 700 aaKnown RBP16.78■□□□□ 0.28
SNHG1-216ENST00000541416 KDM2BQ8NHM5 1336 aa16.77■□□□□ 0.28
SNHG1-216ENST00000541416 DALRD3Q5D0E6 543 aaKnown RBP16.77■□□□□ 0.28
SNHG1-216ENST00000541416 KDM6AO15550 1401 aaPredicted RBP16.77■□□□□ 0.27
SNHG1-216ENST00000541416 CLSPNQ9HAW4 1339 aa16.76■□□□□ 0.27
SNHG1-216ENST00000541416 ARFGEF1Q9Y6D6 1849 aa16.76■□□□□ 0.27
SNHG1-216ENST00000541416 CRKLP46109 303 aaKnown RBP16.76■□□□□ 0.27
SNHG1-216ENST00000541416 C9orf131Q5VYM1 1079 aa16.76■□□□□ 0.27
SNHG1-216ENST00000541416 RBM46Q8TBY0 533 aaKnown RBP16.76■□□□□ 0.27
SNHG1-216ENST00000541416 BRCA1P38398 1863 aaKnown RBP16.76■□□□□ 0.27
SNHG1-216ENST00000541416 EIF4G2P78344 907 aaKnown RBP eCLIP16.75■□□□□ 0.27
SNHG1-216ENST00000541416 MORC1Q86VD1 984 aa16.75■□□□□ 0.27
SNHG1-216ENST00000541416 NFATC2IPQ8NCF5 419 aa16.75■□□□□ 0.27
SNHG1-216ENST00000541416 PANK3Q9H999 370 aa16.75■□□□□ 0.27
SNHG1-216ENST00000541416 NMRK2Q9NPI5 230 aa16.75■□□□□ 0.27
SNHG1-216ENST00000541416 USP42Q9H9J4 1324 aaKnown RBP16.74■□□□□ 0.27
SNHG1-216ENST00000541416 ZPR1O75312 459 aa16.74■□□□□ 0.27
SNHG1-216ENST00000541416 MYH14Q7Z406 1995 aaKnown RBP16.74■□□□□ 0.27
SNHG1-216ENST00000541416 KCNA3P22001 575 aa16.73■□□□□ 0.27
SNHG1-216ENST00000541416 FSTL1Q12841 308 aa16.73■□□□□ 0.27
SNHG1-216ENST00000541416 FKBP8Q14318 412 aa16.72■□□□□ 0.27
SNHG1-216ENST00000541416 SULT6B1Q6IMI4 303 aa16.72■□□□□ 0.27
SNHG1-216ENST00000541416 RNF181Q9P0P0 153 aa16.72■□□□□ 0.27
SNHG1-216ENST00000541416 AEBP1Q8IUX7 1158 aa16.71■□□□□ 0.27
SNHG1-216ENST00000541416 DNAJC5GQ8N7S2 189 aa16.71■□□□□ 0.27
SNHG1-216ENST00000541416 SRP68Q9UHB9 627 aaKnown RBP16.71■□□□□ 0.27
SNHG1-216ENST00000541416 KNSTRNQ9Y448 316 aa16.71■□□□□ 0.27
SNHG1-216ENST00000541416 AKAP4Q5JQC9 854 aa16.7■□□□□ 0.26
SNHG1-216ENST00000541416 ZC3H4Q9UPT8 1303 aaKnown RBP16.7■□□□□ 0.26
SNHG1-216ENST00000541416 DDR1Q08345 913 aa16.69■□□□□ 0.26
SNHG1-216ENST00000541416 WDR90Q96KV7 1748 aa16.69■□□□□ 0.26
SNHG1-216ENST00000541416 SCN11AQ9UI33 1791 aa16.69■□□□□ 0.26
SNHG1-216ENST00000541416 POLRMTO00411 1230 aaKnown RBP16.68■□□□□ 0.26
SNHG1-216ENST00000541416 INTS5Q6P9B9 1019 aaKnown RBP16.68■□□□□ 0.26
SNHG1-216ENST00000541416 SLC52A2Q9HAB3 445 aa16.68■□□□□ 0.26
SNHG1-216ENST00000541416 TNRC6CQ9HCJ0 1690 aaKnown RBP16.68■□□□□ 0.26
SNHG1-216ENST00000541416 TJP1Q07157 1748 aa16.67■□□□□ 0.26
SNHG1-216ENST00000541416 KCPQ6ZWJ8 1503 aa16.67■□□□□ 0.26
SNHG1-216ENST00000541416 HSPA5P11021 654 aaKnown RBP16.67■□□□□ 0.26
SNHG1-216ENST00000541416 TM4SF1P30408 202 aa16.67■□□□□ 0.26
SNHG1-216ENST00000541416 CHRNA5P30532 468 aa16.67■□□□□ 0.26
SNHG1-216ENST00000541416 USPL1Q5W0Q7 1092 aa16.67■□□□□ 0.26
SNHG1-216ENST00000541416 IL13P35225 146 aa16.66■□□□□ 0.26
SNHG1-216ENST00000541416 DNAJC10Q8IXB1 793 aa16.66■□□□□ 0.26
SNHG1-216ENST00000541416 SMC1BQ8NDV3 1235 aa16.66■□□□□ 0.26
SNHG1-216ENST00000541416 KLRG1Q96E93 195 aa16.66■□□□□ 0.26
SNHG1-216ENST00000541416 RRAGCQ9HB90 399 aa16.66■□□□□ 0.26
SNHG1-216ENST00000541416 SOS1Q07889 1333 aaPredicted RBP16.66■□□□□ 0.26
SNHG1-216ENST00000541416 NARFQ9UHQ1 456 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms