RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CD2APQ9Y5K6 639 aa19.34■□□□□ 0.69
SNHG1-213ENST00000540725 PLEKHO1Q53GL0 409 aaPredicted RBP19.33■□□□□ 0.69
SNHG1-213ENST00000540725 KNSTRNQ9Y448 316 aa19.33■□□□□ 0.69
SNHG1-213ENST00000540725 ERVV-2B6SEH9 535 aa19.32■□□□□ 0.68
SNHG1-213ENST00000540725 GNPATO15228 680 aa19.32■□□□□ 0.68
SNHG1-213ENST00000540725 HSP90AB1P08238 724 aaKnown RBP19.32■□□□□ 0.68
SNHG1-213ENST00000540725 ZNF530Q6P9A1 599 aaPredicted RBP19.32■□□□□ 0.68
SNHG1-213ENST00000540725 COL5A3P25940 1745 aaPredicted RBP19.32■□□□□ 0.68
SNHG1-213ENST00000540725 KDRP35968 1356 aa19.32■□□□□ 0.68
SNHG1-213ENST00000540725 GRIN3BO60391 1043 aa19.32■□□□□ 0.68
SNHG1-213ENST00000540725 DCAF5Q96JK2 942 aa19.32■□□□□ 0.68
SNHG1-213ENST00000540725 KDM6AO15550 1401 aaPredicted RBP19.31■□□□□ 0.68
SNHG1-213ENST00000540725 AMOTQ4VCS5 1084 aa19.31■□□□□ 0.68
SNHG1-213ENST00000540725 AEBP1Q8IUX7 1158 aa19.31■□□□□ 0.68
SNHG1-213ENST00000540725 MYH14Q7Z406 1995 aaKnown RBP19.29■□□□□ 0.68
SNHG1-213ENST00000540725 SCN11AQ9UI33 1791 aa19.29■□□□□ 0.68
SNHG1-213ENST00000540725 VIRMAQ69YN4 1812 aaKnown RBP19.28■□□□□ 0.68
SNHG1-213ENST00000540725 AMER1Q5JTC6 1135 aaPredicted RBP19.28■□□□□ 0.68
SNHG1-213ENST00000540725 SLC4A9Q96Q91 983 aa19.28■□□□□ 0.68
SNHG1-213ENST00000540725 RBM42Q9BTD8 480 aaKnown RBP19.28■□□□□ 0.68
SNHG1-213ENST00000540725 KIF7Q2M1P5 1343 aa19.27■□□□□ 0.68
SNHG1-213ENST00000540725 CABP4P57796 275 aa19.27■□□□□ 0.68
SNHG1-213ENST00000540725 C1orf141Q5JVX7 400 aa19.27■□□□□ 0.68
SNHG1-213ENST00000540725 SULT6B1Q6IMI4 303 aa19.27■□□□□ 0.68
SNHG1-213ENST00000540725 IL13P35225 146 aa19.26■□□□□ 0.67
SNHG1-213ENST00000540725 MTHFSP49914 203 aa19.26■□□□□ 0.67
SNHG1-213ENST00000540725 KIF13BQ9NQT8 1826 aa19.25■□□□□ 0.67
SNHG1-213ENST00000540725 C4AP0C0L4 1744 aa19.25■□□□□ 0.67
SNHG1-213ENST00000540725 RTCBQ9Y3I0 505 aaKnown RBP19.25■□□□□ 0.67
SNHG1-213ENST00000540725 C1QTNF8P60827 252 aa19.24■□□□□ 0.67
SNHG1-213ENST00000540725 TRAPPC3LQ5T215 181 aa19.23■□□□□ 0.67
SNHG1-213ENST00000540725 RC3H1Q5TC82 1133 aaKnown RBP19.23■□□□□ 0.67
SNHG1-213ENST00000540725 CNTNAP4Q9C0A0 1308 aa19.23■□□□□ 0.67
SNHG1-213ENST00000540725 TJP1Q07157 1748 aa19.22■□□□□ 0.67
SNHG1-213ENST00000540725 MMP10P09238 476 aa19.22■□□□□ 0.67
SNHG1-213ENST00000540725 CICQ96RK0 1608 aaPredicted RBP19.22■□□□□ 0.67
SNHG1-213ENST00000540725 KIAA1551Q9HCM1 1747 aa19.22■□□□□ 0.67
SNHG1-213ENST00000540725 GIGYF1O75420 1035 aaPredicted RBP19.21■□□□□ 0.67
SNHG1-213ENST00000540725 ADRA2BP18089 450 aa19.21■□□□□ 0.67
SNHG1-213ENST00000540725 NFATC2IPQ8NCF5 419 aa19.21■□□□□ 0.67
SNHG1-213ENST00000540725 WWC3Q9ULE0 1092 aa19.21■□□□□ 0.67
SNHG1-213ENST00000540725 N4BP2Q86UW6 1770 aaPredicted RBP19.21■□□□□ 0.67
SNHG1-213ENST00000540725 PTCD1O75127 700 aaKnown RBP19.2■□□□□ 0.66
SNHG1-213ENST00000540725 RPS6KA4O75676 772 aa19.2■□□□□ 0.66
SNHG1-213ENST00000540725 ARHGEF1Q92888 912 aaKnown RBP19.2■□□□□ 0.66
SNHG1-213ENST00000540725 ATP10DQ9P241 1426 aa19.2■□□□□ 0.66
SNHG1-213ENST00000540725 NLGN1Q8N2Q7 840 aa19.19■□□□□ 0.66
SNHG1-213ENST00000540725 SENP3-EIF4A1A0A087X0R7 540 aa19.19■□□□□ 0.66
SNHG1-213ENST00000540725 PER1O15534 1290 aaPredicted RBP19.19■□□□□ 0.66
SNHG1-213ENST00000540725 AKAP4Q5JQC9 854 aa19.19■□□□□ 0.66
SNHG1-213ENST00000540725 RFC4P35249 363 aa19.18■□□□□ 0.66
SNHG1-213ENST00000540725 PXDNLA1KZ92 1463 aa19.17■□□□□ 0.66
SNHG1-213ENST00000540725 HMOX1P09601 288 aa19.17■□□□□ 0.66
SNHG1-213ENST00000540725 GYS1P13807 737 aa19.17■□□□□ 0.66
SNHG1-213ENST00000540725 CRKLP46109 303 aaKnown RBP19.17■□□□□ 0.66
SNHG1-213ENST00000540725 CC2D1BQ5T0F9 858 aaKnown RBP19.17■□□□□ 0.66
SNHG1-213ENST00000540725 ADCY9O60503 1353 aa19.17■□□□□ 0.66
SNHG1-213ENST00000540725 C10orf71Q711Q0 1435 aa19.17■□□□□ 0.66
SNHG1-213ENST00000540725 MRC1P22897 1456 aa19.16■□□□□ 0.66
SNHG1-213ENST00000540725 BRCA1P38398 1863 aaKnown RBP19.16■□□□□ 0.66
SNHG1-213ENST00000540725 ADAMTS7Q9UKP4 1686 aa19.15■□□□□ 0.66
SNHG1-213ENST00000540725 SLC52A2Q9HAB3 445 aa19.15■□□□□ 0.66
SNHG1-213ENST00000540725 DIAPH1O60610 1272 aaKnown RBP19.14■□□□□ 0.65
SNHG1-213ENST00000540725 LGR6Q9HBX8 967 aa19.14■□□□□ 0.65
SNHG1-213ENST00000540725 TGFB2P61812 414 aa19.13■□□□□ 0.65
SNHG1-213ENST00000540725 CCDC87Q9NVE4 849 aa19.13■□□□□ 0.65
SNHG1-213ENST00000540725 PARP3Q9Y6F1 533 aa19.13■□□□□ 0.65
SNHG1-213ENST00000540725 NPC1L1Q9UHC9 1359 aa19.12■□□□□ 0.65
SNHG1-213ENST00000540725 RNMTO43148 476 aaKnown RBP19.12■□□□□ 0.65
SNHG1-213ENST00000540725 COL3A1P02461 1466 aaPredicted RBP19.12■□□□□ 0.65
SNHG1-213ENST00000540725 USP42Q9H9J4 1324 aaKnown RBP19.11■□□□□ 0.65
SNHG1-213ENST00000540725 A0A0G2JLW4 131 aa19.11■□□□□ 0.65
SNHG1-213ENST00000540725 MTHFSDQ2M296 383 aaKnown RBP19.11■□□□□ 0.65
SNHG1-213ENST00000540725 GPBP1L1Q9HC44 474 aaPredicted RBP19.11■□□□□ 0.65
SNHG1-213ENST00000540725 SRP68Q9UHB9 627 aaKnown RBP19.11■□□□□ 0.65
SNHG1-213ENST00000540725 ARFGEF1Q9Y6D6 1849 aa19.1■□□□□ 0.65
SNHG1-213ENST00000540725 UBR2Q8IWV8 1755 aa19.1■□□□□ 0.65
SNHG1-213ENST00000540725 KCPQ6ZWJ8 1503 aa19.1■□□□□ 0.65
SNHG1-213ENST00000540725 INTS5Q6P9B9 1019 aaKnown RBP19.1■□□□□ 0.65
SNHG1-213ENST00000540725 DNAJC10Q8IXB1 793 aa19.1■□□□□ 0.65
SNHG1-213ENST00000540725 CEP350Q5VT06 3117 aa19.09■□□□□ 0.65
SNHG1-213ENST00000540725 SLC39A6Q13433 755 aa19.09■□□□□ 0.65
SNHG1-213ENST00000540725 CNGB1Q14028 1251 aaPredicted RBP19.09■□□□□ 0.65
SNHG1-213ENST00000540725 ZNF526Q8TF50 670 aaPredicted RBP19.09■□□□□ 0.65
SNHG1-213ENST00000540725 BCS1LQ9Y276 419 aa19.09■□□□□ 0.65
SNHG1-213ENST00000540725 DPEP1P16444 411 aa19.08■□□□□ 0.65
SNHG1-213ENST00000540725 FKBP8Q14318 412 aa19.08■□□□□ 0.65
SNHG1-213ENST00000540725 AFDNP55196 1824 aaKnown RBP19.07■□□□□ 0.64
SNHG1-213ENST00000540725 CYP19A1P11511 503 aaPredicted RBP19.06■□□□□ 0.64
SNHG1-213ENST00000540725 DDR1Q08345 913 aa19.06■□□□□ 0.64
SNHG1-213ENST00000540725 SOS1Q07889 1333 aaPredicted RBP19.06■□□□□ 0.64
SNHG1-213ENST00000540725 SIPA1L3O60292 1781 aaPredicted RBP19.06■□□□□ 0.64
SNHG1-213ENST00000540725 U2SURPO15042 1029 aaKnown RBP19.06■□□□□ 0.64
SNHG1-213ENST00000540725 ZPR1O75312 459 aa19.05■□□□□ 0.64
SNHG1-213ENST00000540725 FCHSD2O94868 740 aa19.05■□□□□ 0.64
SNHG1-213ENST00000540725 USPL1Q5W0Q7 1092 aa19.04■□□□□ 0.64
SNHG1-213ENST00000540725 COL15A1P39059 1388 aa19.04■□□□□ 0.64
SNHG1-213ENST00000540725 POLRMTO00411 1230 aaKnown RBP19.03■□□□□ 0.64
SNHG1-213ENST00000540725 KCNA3P22001 575 aa19.03■□□□□ 0.64
SNHG1-213ENST00000540725 ARHGAP27Q6ZUM4 889 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms