RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 C2CD2LO14523 706 aa4.26□□□□□ -1.73
CD44-212ENST00000524922 ATP4AP20648 1035 aa4.26□□□□□ -1.73
CD44-212ENST00000524922 IRS1P35568 1242 aa4.26□□□□□ -1.73
CD44-212ENST00000524922 SUZ12Q15022 739 aaKnown RBP4.26□□□□□ -1.73
CD44-212ENST00000524922 NUCKS1Q9H1E3 243 aaKnown RBP4.26□□□□□ -1.73
CD44-212ENST00000524922 IQSEC3Q9UPP2 1182 aaPredicted RBP4.26□□□□□ -1.73
CD44-212ENST00000524922 DNMT3AQ9Y6K1 912 aaPredicted RBP4.26□□□□□ -1.73
CD44-212ENST00000524922 CNTNAP5Q8WYK1 1306 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 A0A1B0GTH6 734 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 TMEM229AB2RXF0 380 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 RNF225M0QZC1 329 aaPredicted RBP4.25□□□□□ -1.73
CD44-212ENST00000524922 PIK3CDO00329 1044 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 OIP5O43482 229 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 BCRP11274 1271 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 MSX1P28360 303 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 PHKA2P46019 1235 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 EIF4G2P78344 907 aaKnown RBP eCLIP4.25□□□□□ -1.73
CD44-212ENST00000524922 RNF135Q8IUD6 432 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 ZSCAN10Q96SZ4 725 aaPredicted RBP4.25□□□□□ -1.73
CD44-212ENST00000524922 CFHR5Q9BXR6 569 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 CRISPLD1Q9H336 500 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 DOLKQ9UPQ8 538 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 COG6Q9Y2V7 657 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 USP3Q9Y6I4 520 aa4.25□□□□□ -1.73
CD44-212ENST00000524922 SHISA8B8ZZ34 492 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 MYCP01106 439 aaPredicted RBP4.24□□□□□ -1.73
CD44-212ENST00000524922 INHAP05111 366 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 MX2P20592 715 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 USP4Q13107 963 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 MTFR1Q15390 333 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 KANK3Q6NY19 840 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 PLPP7Q8NBV4 271 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 RHBDD1Q8TEB9 315 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 SLC4A9Q96Q91 983 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 ALG2Q9H553 416 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 GPAMQ9HCL2 828 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 PCDHGA11Q9Y5H2 935 aa4.24□□□□□ -1.73
CD44-212ENST00000524922 BNIP3LO60238 219 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 PRKCSHP14314 528 aaPredicted RBP4.23□□□□□ -1.73
CD44-212ENST00000524922 GDF10P55107 478 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 SNRPNP63162 240 aaKnown RBP4.23□□□□□ -1.73
CD44-212ENST00000524922 LBRQ14739 615 aaKnown RBP4.23□□□□□ -1.73
CD44-212ENST00000524922 SLFNL1Q499Z3 407 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 ESCO1Q5FWF5 840 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 ADAMTS19Q8TE59 1207 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 C7orf43Q8WVR3 580 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 KLRG1Q96E93 195 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 SCARF2Q96GP6 870 aaPredicted RBP4.23□□□□□ -1.73
CD44-212ENST00000524922 DCAF5Q96JK2 942 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 RUBCNLQ9H714 662 aa4.23□□□□□ -1.73
CD44-212ENST00000524922 PROCP04070 461 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 ABL2P42684 1182 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 EPHA4P54764 986 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 MARSP56192 900 aaKnown RBP4.22□□□□□ -1.73
CD44-212ENST00000524922 CTBSQ01459 385 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 TLR1Q15399 786 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 WASHC4Q2M389 1173 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 MAP7D1Q3KQU3 841 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 OXLD1Q5BKU9 147 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 FOXR1Q6PIV2 292 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 POM121Q96HA1 1249 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 TRERF1Q96PN7 1200 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 OXCT2Q9BYC2 517 aaPredicted RBP4.22□□□□□ -1.73
CD44-212ENST00000524922 KLF15Q9UIH9 416 aa4.22□□□□□ -1.73
CD44-212ENST00000524922 COL8A1P27658 744 aa4.21□□□□□ -1.74
CD44-212ENST00000524922 MAP2K3P46734 347 aa4.21□□□□□ -1.74
CD44-212ENST00000524922 SMTNP53814 917 aa4.21□□□□□ -1.74
CD44-212ENST00000524922 MAP3K10Q02779 954 aa4.21□□□□□ -1.74
CD44-212ENST00000524922 PLA2G4EQ3MJ16 856 aa4.21□□□□□ -1.74
CD44-212ENST00000524922 GNASQ5JWF2 1037 aa4.21□□□□□ -1.74
CD44-212ENST00000524922 TMEM214Q6NUQ4 689 aaKnown RBP4.21□□□□□ -1.74
CD44-212ENST00000524922 ABHD17AQ96GS6 310 aa4.21□□□□□ -1.74
CD44-212ENST00000524922 ATXN7L1Q9ULK2 861 aaPredicted RBP4.21□□□□□ -1.74
CD44-212ENST00000524922 CDK2AP1O14519 115 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 SOX11P35716 441 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 PLA2G4AP47712 749 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 FOXK2Q01167 660 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 GPAT2Q6NUI2 795 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 LINC00114Q6XXX2 140 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 SLCO4C1Q6ZQN7 724 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 NFATC2IPQ8NCF5 419 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 ZDHHC1Q8WTX9 485 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 MDFIQ99750 246 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 ZCCHC2Q9C0B9 1178 aaKnown RBP4.2□□□□□ -1.74
CD44-212ENST00000524922 ENAMQ9NRM1 1142 aa4.2□□□□□ -1.74
CD44-212ENST00000524922 KRBA1A5PL33 1030 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 A6NJY4 79 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 IGHA1P01876 353 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 FGFR3P22607 806 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 POTEAQ6S8J7 498 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 NLRP8Q86W28 1048 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 BEND7Q8N7W2 519 aaPredicted RBP4.19□□□□□ -1.74
CD44-212ENST00000524922 C1orf216Q8TAB5 229 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 SIRT1Q96EB6 747 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 UCN2Q96RP3 112 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 SPOCK3Q9BQ16 436 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 ESF1Q9H501 851 aaKnown RBP4.19□□□□□ -1.74
CD44-212ENST00000524922 PRM3Q9NNZ6 103 aa4.19□□□□□ -1.74
CD44-212ENST00000524922 POM121CA8CG34 1229 aa4.18□□□□□ -1.74
CD44-212ENST00000524922 ZBTB7BO15156 539 aaPredicted RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms