RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 AIMP1Q12904 312 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-209ENST00000509277 SLC4A10Q6U841 1118 aa10.98□□□□□ -0.65
LIMCH1-209ENST00000509277 TNNQ9UQP3 1299 aa10.98□□□□□ -0.65
LIMCH1-209ENST00000509277 ALS2Q96Q42 1657 aa10.98□□□□□ -0.65
LIMCH1-209ENST00000509277 PHKG2P15735 406 aa10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 KCNQ4P56696 695 aa10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 TAF7Q15545 349 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 FTSJ3Q8IY81 847 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 COL5A2P05997 1499 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 C20orf194Q5TEA3 1177 aa10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 MEGF6O75095 1541 aa10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 CPDO75976 1380 aa10.97□□□□□ -0.65
LIMCH1-209ENST00000509277 PRAMEF22A3QJZ6 481 aa10.96□□□□□ -0.65
LIMCH1-209ENST00000509277 MYL6BP14649 208 aa10.96□□□□□ -0.65
LIMCH1-209ENST00000509277 PRIM1P49642 420 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-209ENST00000509277 PANK1Q8TE04 598 aa10.96□□□□□ -0.65
LIMCH1-209ENST00000509277 CFAP44Q96MT7 982 aa10.96□□□□□ -0.65
LIMCH1-209ENST00000509277 SLIT3O75094 1523 aa10.96□□□□□ -0.65
LIMCH1-209ENST00000509277 TMOD3Q9NYL9 352 aa10.96□□□□□ -0.66
LIMCH1-209ENST00000509277 KIF24Q5T7B8 1368 aa10.96□□□□□ -0.66
LIMCH1-209ENST00000509277 COG6Q9Y2V7 657 aa10.95□□□□□ -0.66
LIMCH1-209ENST00000509277 SSH1Q8WYL5 1049 aa10.95□□□□□ -0.66
LIMCH1-209ENST00000509277 NHSL1Q5SYE7 1610 aa10.95□□□□□ -0.66
LIMCH1-209ENST00000509277 CRB1P82279 1406 aa10.95□□□□□ -0.66
LIMCH1-209ENST00000509277 PCDH11XQ9BZA7 1347 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 PCDH11YQ9BZA8 1340 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 STK31Q9BXU1 1019 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 IFT57Q9NWB7 429 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 PHRF1Q9P1Y6 1649 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 SPATA31A6Q5VVP1 1343 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 ZNF521Q96K83 1311 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 RRP1P56182 461 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 HDGFL1Q5TGJ6 251 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 MARF1Q9Y4F3 1742 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 SLC4A2P04920 1241 aa10.94□□□□□ -0.66
LIMCH1-209ENST00000509277 KDRP35968 1356 aa10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 SPATA31A1Q5TZJ5 1347 aa10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 KCNQ2O43526 872 aa10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 COL16A1Q07092 1604 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 CCDC27Q2M243 656 aa10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 ITPRIPQ8IWB1 547 aa10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 CRBNQ96SW2 442 aa10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 TRPC5Q9UL62 973 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 NOB1Q9ULX3 412 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-209ENST00000509277 SEPT12Q8IYM1 358 aa10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 DCAF5Q96JK2 942 aa10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 GJD4Q96KN9 370 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 ASAP1Q9ULH1 1129 aa10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 AHDC1Q5TGY3 1603 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 RARSP54136 660 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 FKBP5Q13451 457 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 F6X3S4 739 aa10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 HSP90AB1P08238 724 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-209ENST00000509277 FBXO41Q8TF61 875 aa10.91□□□□□ -0.66
LIMCH1-209ENST00000509277 ZNF496Q96IT1 587 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-209ENST00000509277 SLC52A2Q9HAB3 445 aa10.91□□□□□ -0.66
LIMCH1-209ENST00000509277 LRP6O75581 1613 aa10.91□□□□□ -0.66
LIMCH1-209ENST00000509277 SPATA31A5Q5VU36 1347 aa10.91□□□□□ -0.66
LIMCH1-209ENST00000509277 SPATA31A7Q8IWB4 1347 aa10.91□□□□□ -0.66
LIMCH1-209ENST00000509277 CHL1O00533 1208 aa10.91□□□□□ -0.66
LIMCH1-209ENST00000509277 MARCH10Q8NA82 808 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-209ENST00000509277 EP400Q96L91 3159 aa10.9□□□□□ -0.66
LIMCH1-209ENST00000509277 PTF1AQ7RTS3 328 aa10.9□□□□□ -0.66
LIMCH1-209ENST00000509277 IQSEC2Q5JU85 1478 aa10.9□□□□□ -0.66
LIMCH1-209ENST00000509277 VAMP4O75379 141 aa10.9□□□□□ -0.66
LIMCH1-209ENST00000509277 ZNF790Q6PG37 636 aa10.9□□□□□ -0.66
LIMCH1-209ENST00000509277 DDRGK1Q96HY6 314 aa10.9□□□□□ -0.66
LIMCH1-209ENST00000509277 VPS72Q15906 364 aa10.89□□□□□ -0.67
LIMCH1-209ENST00000509277 G2E3Q7L622 706 aa10.89□□□□□ -0.67
LIMCH1-209ENST00000509277 CHPF2Q9P2E5 772 aa10.89□□□□□ -0.67
LIMCH1-209ENST00000509277 FAM177BA6PVY3 158 aa10.89□□□□□ -0.67
LIMCH1-209ENST00000509277 SMIM5Q71RC9 77 aa10.89□□□□□ -0.67
LIMCH1-209ENST00000509277 PIGBQ92521 554 aa10.89□□□□□ -0.67
LIMCH1-209ENST00000509277 ZKSCAN2Q63HK3 967 aa10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 PHAXQ9H814 394 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 USP16Q9Y5T5 823 aa10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 TRIM37O94972 964 aa10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 C1orf115Q9H7X2 142 aa10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 RBM10P98175 930 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 RRAGDQ9NQL2 400 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 DLG5Q8TDM6 1919 aa10.88□□□□□ -0.67
LIMCH1-209ENST00000509277 APBB1O00213 710 aa10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 FNBP4Q8N3X1 1017 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 HTATSF1O43719 755 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 A1BGP04217 495 aa10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 EIF4A1P60842 406 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 CCDC30Q5VVM6 783 aa10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 FMNL2Q96PY5 1086 aa10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 IL16Q14005 1332 aa10.87□□□□□ -0.67
LIMCH1-209ENST00000509277 RXRBP28702 533 aa10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 ILDR1Q86SU0 546 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 JARID2Q92833 1246 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 RLBP1P12271 317 aa10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 PROSER3Q2NL68 480 aa10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 DNAJC10Q8IXB1 793 aa10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 DZIP1LQ8IYY4 767 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 IPO8O15397 1037 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 ZNF853P0CG23 659 aa10.86□□□□□ -0.67
LIMCH1-209ENST00000509277 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms