RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 IFNL2Q8IZJ0 200 aa20.4■□□□□ 0.86
TRAF4-212ENST00000498540 POLKQ9UBT6 870 aa20.4■□□□□ 0.86
TRAF4-212ENST00000498540 PXDNLA1KZ92 1463 aa20.39■□□□□ 0.85
TRAF4-212ENST00000498540 KDRP35968 1356 aa20.39■□□□□ 0.85
TRAF4-212ENST00000498540 HSPA6P17066 643 aa20.39■□□□□ 0.85
TRAF4-212ENST00000498540 ATG3Q9NT62 314 aa20.39■□□□□ 0.85
TRAF4-212ENST00000498540 MMP10P09238 476 aa20.38■□□□□ 0.85
TRAF4-212ENST00000498540 COL5A3P25940 1745 aaPredicted RBP20.38■□□□□ 0.85
TRAF4-212ENST00000498540 ZNF831Q5JPB2 1677 aa20.38■□□□□ 0.85
TRAF4-212ENST00000498540 EIF4A2Q14240 407 aaKnown RBP20.37■□□□□ 0.85
TRAF4-212ENST00000498540 SLC4A9Q96Q91 983 aa20.35■□□□□ 0.85
TRAF4-212ENST00000498540 C4AP0C0L4 1744 aa20.34■□□□□ 0.85
TRAF4-212ENST00000498540 KIF3CO14782 793 aa20.34■□□□□ 0.85
TRAF4-212ENST00000498540 TNNT2P45379 298 aaPredicted RBP20.34■□□□□ 0.85
TRAF4-212ENST00000498540 C10orf71Q711Q0 1435 aa20.34■□□□□ 0.85
TRAF4-212ENST00000498540 BRCA1P38398 1863 aaKnown RBP20.33■□□□□ 0.85
TRAF4-212ENST00000498540 PLEKHG2Q9H7P9 1386 aa20.33■□□□□ 0.84
TRAF4-212ENST00000498540 RTCBQ9Y3I0 505 aaKnown RBP20.32■□□□□ 0.84
TRAF4-212ENST00000498540 MYH14Q7Z406 1995 aaKnown RBP20.32■□□□□ 0.84
TRAF4-212ENST00000498540 KDM6AO15550 1401 aaPredicted RBP20.31■□□□□ 0.84
TRAF4-212ENST00000498540 TRAPPC3LQ5T215 181 aa20.31■□□□□ 0.84
TRAF4-212ENST00000498540 RBM42Q9BTD8 480 aaKnown RBP20.31■□□□□ 0.84
TRAF4-212ENST00000498540 A0A0G2JLW4 131 aa20.3■□□□□ 0.84
TRAF4-212ENST00000498540 ARHGEF1Q92888 912 aaKnown RBP20.3■□□□□ 0.84
TRAF4-212ENST00000498540 POLR3GLQ9BT43 218 aa20.3■□□□□ 0.84
TRAF4-212ENST00000498540 BCS1LQ9Y276 419 aa20.3■□□□□ 0.84
TRAF4-212ENST00000498540 ERVV-2B6SEH9 535 aa20.29■□□□□ 0.84
TRAF4-212ENST00000498540 TGFB2P61812 414 aa20.29■□□□□ 0.84
TRAF4-212ENST00000498540 NLGN1Q8N2Q7 840 aa20.29■□□□□ 0.84
TRAF4-212ENST00000498540 CNTNAP4Q9C0A0 1308 aa20.28■□□□□ 0.84
TRAF4-212ENST00000498540 GYS1P13807 737 aa20.28■□□□□ 0.84
TRAF4-212ENST00000498540 RC3H1Q5TC82 1133 aaKnown RBP20.28■□□□□ 0.84
TRAF4-212ENST00000498540 DCAF5Q96JK2 942 aa20.28■□□□□ 0.84
TRAF4-212ENST00000498540 DPEP1P16444 411 aa20.27■□□□□ 0.84
TRAF4-212ENST00000498540 ADRA2BP18089 450 aa20.27■□□□□ 0.84
TRAF4-212ENST00000498540 ARFGEF1Q9Y6D6 1849 aa20.26■□□□□ 0.83
TRAF4-212ENST00000498540 RPS6KA4O75676 772 aa20.26■□□□□ 0.83
TRAF4-212ENST00000498540 HSP90AB1P08238 724 aaKnown RBP20.26■□□□□ 0.83
TRAF4-212ENST00000498540 ZNF530Q6P9A1 599 aaPredicted RBP20.26■□□□□ 0.83
TRAF4-212ENST00000498540 CCDC87Q9NVE4 849 aa20.26■□□□□ 0.83
TRAF4-212ENST00000498540 TJP1Q07157 1748 aa20.26■□□□□ 0.83
TRAF4-212ENST00000498540 RFC4P35249 363 aa20.25■□□□□ 0.83
TRAF4-212ENST00000498540 PLEKHO1Q53GL0 409 aaPredicted RBP20.25■□□□□ 0.83
TRAF4-212ENST00000498540 CABP4P57796 275 aa20.24■□□□□ 0.83
TRAF4-212ENST00000498540 ARHGAP27Q6ZUM4 889 aa20.24■□□□□ 0.83
TRAF4-212ENST00000498540 PARP3Q9Y6F1 533 aa20.24■□□□□ 0.83
TRAF4-212ENST00000498540 FCHSD2O94868 740 aa20.23■□□□□ 0.83
TRAF4-212ENST00000498540 TRIM26Q12899 539 aaPredicted RBP20.23■□□□□ 0.83
TRAF4-212ENST00000498540 AEBP1Q8IUX7 1158 aa20.23■□□□□ 0.83
TRAF4-212ENST00000498540 PTCD1O75127 700 aaKnown RBP20.22■□□□□ 0.83
TRAF4-212ENST00000498540 KCNA3P22001 575 aa20.22■□□□□ 0.83
TRAF4-212ENST00000498540 NMRK2Q9NPI5 230 aa20.22■□□□□ 0.83
TRAF4-212ENST00000498540 TOMM70O94826 608 aa20.21■□□□□ 0.83
TRAF4-212ENST00000498540 APLP1P51693 650 aa20.21■□□□□ 0.83
TRAF4-212ENST00000498540 AMOTQ4VCS5 1084 aa20.21■□□□□ 0.83
TRAF4-212ENST00000498540 SRP68Q9UHB9 627 aaKnown RBP20.21■□□□□ 0.83
TRAF4-212ENST00000498540 TIMELESSQ9UNS1 1208 aa20.21■□□□□ 0.83
TRAF4-212ENST00000498540 ADAMTS7Q9UKP4 1686 aa20.21■□□□□ 0.83
TRAF4-212ENST00000498540 SCN11AQ9UI33 1791 aa20.21■□□□□ 0.83
TRAF4-212ENST00000498540 CRKLP46109 303 aaKnown RBP20.2■□□□□ 0.82
TRAF4-212ENST00000498540 MTHFSP49914 203 aa20.2■□□□□ 0.82
TRAF4-212ENST00000498540 PANK3Q9H999 370 aa20.2■□□□□ 0.82
TRAF4-212ENST00000498540 NFATC2IPQ8NCF5 419 aa20.19■□□□□ 0.82
TRAF4-212ENST00000498540 WDR90Q96KV7 1748 aa20.19■□□□□ 0.82
TRAF4-212ENST00000498540 DDR1Q08345 913 aa20.18■□□□□ 0.82
TRAF4-212ENST00000498540 FKBP8Q14318 412 aa20.18■□□□□ 0.82
TRAF4-212ENST00000498540 C1orf141Q5JVX7 400 aa20.18■□□□□ 0.82
TRAF4-212ENST00000498540 C9orf131Q5VYM1 1079 aa20.18■□□□□ 0.82
TRAF4-212ENST00000498540 USP42Q9H9J4 1324 aaKnown RBP20.18■□□□□ 0.82
TRAF4-212ENST00000498540 DNAJC5GQ8N7S2 189 aa20.16■□□□□ 0.82
TRAF4-212ENST00000498540 PIM2Q9P1W9 311 aa20.16■□□□□ 0.82
TRAF4-212ENST00000498540 SULT6B1Q6IMI4 303 aa20.15■□□□□ 0.82
TRAF4-212ENST00000498540 KCPQ6ZWJ8 1503 aa20.15■□□□□ 0.82
TRAF4-212ENST00000498540 VIRMAQ69YN4 1812 aaKnown RBP20.15■□□□□ 0.82
TRAF4-212ENST00000498540 SBF1O95248 1867 aa20.15■□□□□ 0.82
TRAF4-212ENST00000498540 HSPA5P11021 654 aaKnown RBP20.14■□□□□ 0.81
TRAF4-212ENST00000498540 CHRNA5P30532 468 aa20.14■□□□□ 0.81
TRAF4-212ENST00000498540 INTS5Q6P9B9 1019 aaKnown RBP20.14■□□□□ 0.81
TRAF4-212ENST00000498540 MORC1Q86VD1 984 aa20.14■□□□□ 0.81
TRAF4-212ENST00000498540 DALRD3Q5D0E6 543 aaKnown RBP20.13■□□□□ 0.81
TRAF4-212ENST00000498540 AFDNP55196 1824 aaKnown RBP20.12■□□□□ 0.81
TRAF4-212ENST00000498540 POLRMTO00411 1230 aaKnown RBP20.12■□□□□ 0.81
TRAF4-212ENST00000498540 EIF4G2P78344 907 aaKnown RBP eCLIP20.12■□□□□ 0.81
TRAF4-212ENST00000498540 RBM46Q8TBY0 533 aaKnown RBP20.12■□□□□ 0.81
TRAF4-212ENST00000498540 TNRC6CQ9HCJ0 1690 aaKnown RBP20.12■□□□□ 0.81
TRAF4-212ENST00000498540 IL13P35225 146 aa20.11■□□□□ 0.81
TRAF4-212ENST00000498540 DNAJC10Q8IXB1 793 aa20.11■□□□□ 0.81
TRAF4-212ENST00000498540 RNF181Q9P0P0 153 aa20.11■□□□□ 0.81
TRAF4-212ENST00000498540 MRC1P22897 1456 aa20.11■□□□□ 0.81
TRAF4-212ENST00000498540 CLSPNQ9HAW4 1339 aa20.1■□□□□ 0.81
TRAF4-212ENST00000498540 TM4SF1P30408 202 aa20.1■□□□□ 0.81
TRAF4-212ENST00000498540 HTRA3P83110 453 aa20.1■□□□□ 0.81
TRAF4-212ENST00000498540 SOS1Q07889 1333 aaPredicted RBP20.09■□□□□ 0.81
TRAF4-212ENST00000498540 DLEC1Q9Y238 1755 aa20.09■□□□□ 0.81
TRAF4-212ENST00000498540 USPL1Q5W0Q7 1092 aa20.09■□□□□ 0.81
TRAF4-212ENST00000498540 C16orf71Q8IYS4 520 aaPredicted RBP20.09■□□□□ 0.81
TRAF4-212ENST00000498540 NRXN2Q9P2S2 1712 aa20.09■□□□□ 0.81
TRAF4-212ENST00000498540 AKAP4Q5JQC9 854 aa20.08■□□□□ 0.81
TRAF4-212ENST00000498540 SLC52A2Q9HAB3 445 aa20.08■□□□□ 0.81
TRAF4-212ENST00000498540 LGR6Q9HBX8 967 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms