RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
CPSF4-210ENST00000469897 GRIN3BO60391 1043 aa18.1■□□□□ 0.49
CPSF4-210ENST00000469897 C1orf141Q5JVX7 400 aa18.09■□□□□ 0.49
CPSF4-210ENST00000469897 NFATC2IPQ8NCF5 419 aa18.09■□□□□ 0.49
CPSF4-210ENST00000469897 UTRNP46939 3433 aa18.09■□□□□ 0.49
CPSF4-210ENST00000469897 PER1O15534 1290 aaPredicted RBP18.08■□□□□ 0.48
CPSF4-210ENST00000469897 TRAPPC3LQ5T215 181 aa18.08■□□□□ 0.48
CPSF4-210ENST00000469897 PKD1L3Q7Z443 1732 aa18.07■□□□□ 0.48
CPSF4-210ENST00000469897 TOGARAM1Q9Y4F4 1720 aa18.07■□□□□ 0.48
CPSF4-210ENST00000469897 PTCD1O75127 700 aaKnown RBP18.07■□□□□ 0.48
CPSF4-210ENST00000469897 RTCBQ9Y3I0 505 aaKnown RBP18.07■□□□□ 0.48
CPSF4-210ENST00000469897 MAP2P11137 1827 aaKnown RBP18.07■□□□□ 0.48
CPSF4-210ENST00000469897 QSER1Q2KHR3 1735 aa18.06■□□□□ 0.48
CPSF4-210ENST00000469897 ANKRD26Q9UPS8 1709 aa18.06■□□□□ 0.48
CPSF4-210ENST00000469897 PLEKHG2Q9H7P9 1386 aa18.06■□□□□ 0.48
CPSF4-210ENST00000469897 CNGB1Q14028 1251 aaPredicted RBP18.06■□□□□ 0.48
CPSF4-210ENST00000469897 CC2D1BQ5T0F9 858 aaKnown RBP18.06■□□□□ 0.48
CPSF4-210ENST00000469897 WWC3Q9ULE0 1092 aa18.06■□□□□ 0.48
CPSF4-210ENST00000469897 ARHGEF1Q92888 912 aaKnown RBP18.05■□□□□ 0.48
CPSF4-210ENST00000469897 C5P01031 1676 aa18.04■□□□□ 0.48
CPSF4-210ENST00000469897 HMOX1P09601 288 aa18.04■□□□□ 0.48
CPSF4-210ENST00000469897 RC3H1Q5TC82 1133 aaKnown RBP18.04■□□□□ 0.48
CPSF4-210ENST00000469897 TUBGCP6Q96RT7 1819 aa18.04■□□□□ 0.48
CPSF4-210ENST00000469897 C4BP0C0L5 1744 aa18.03■□□□□ 0.48
CPSF4-210ENST00000469897 RPS6KA4O75676 772 aa18.03■□□□□ 0.48
CPSF4-210ENST00000469897 MMP10P09238 476 aa18.03■□□□□ 0.48
CPSF4-210ENST00000469897 LGR6Q9HBX8 967 aa18.03■□□□□ 0.48
CPSF4-210ENST00000469897 KDM6AO15550 1401 aaPredicted RBP18.03■□□□□ 0.48
CPSF4-210ENST00000469897 COL24A1Q17RW2 1714 aa18.03■□□□□ 0.48
CPSF4-210ENST00000469897 NLGN1Q8N2Q7 840 aa18.02■□□□□ 0.48
CPSF4-210ENST00000469897 KDRP35968 1356 aa18.02■□□□□ 0.47
CPSF4-210ENST00000469897 RFC4P35249 363 aa18.01■□□□□ 0.47
CPSF4-210ENST00000469897 C1QTNF8P60827 252 aa18.01■□□□□ 0.47
CPSF4-210ENST00000469897 AKAP4Q5JQC9 854 aa18.01■□□□□ 0.47
CPSF4-210ENST00000469897 ITGB4P16144 1822 aa18■□□□□ 0.47
CPSF4-210ENST00000469897 DIAPH1O60610 1272 aaKnown RBP18■□□□□ 0.47
CPSF4-210ENST00000469897 CNTNAP4Q9C0A0 1308 aa17.99■□□□□ 0.47
CPSF4-210ENST00000469897 GYS1P13807 737 aa17.99■□□□□ 0.47
CPSF4-210ENST00000469897 MTHFSDQ2M296 383 aaKnown RBP17.99■□□□□ 0.47
CPSF4-210ENST00000469897 ADRA2BP18089 450 aa17.98■□□□□ 0.47
CPSF4-210ENST00000469897 CRKLP46109 303 aaKnown RBP17.98■□□□□ 0.47
CPSF4-210ENST00000469897 RNMTO43148 476 aaKnown RBP17.97■□□□□ 0.47
CPSF4-210ENST00000469897 SLC52A2Q9HAB3 445 aa17.97■□□□□ 0.47
CPSF4-210ENST00000469897 A0A0G2JLW4 131 aa17.96■□□□□ 0.47
CPSF4-210ENST00000469897 GIGYF1O75420 1035 aaPredicted RBP17.96■□□□□ 0.47
CPSF4-210ENST00000469897 SLC39A6Q13433 755 aa17.96■□□□□ 0.47
CPSF4-210ENST00000469897 INTS5Q6P9B9 1019 aaKnown RBP17.96■□□□□ 0.47
CPSF4-210ENST00000469897 TAF1LQ8IZX4 1826 aa17.95■□□□□ 0.46
CPSF4-210ENST00000469897 U2SURPO15042 1029 aaKnown RBP17.95■□□□□ 0.46
CPSF4-210ENST00000469897 TGFB2P61812 414 aa17.95■□□□□ 0.46
CPSF4-210ENST00000469897 DNAJC10Q8IXB1 793 aa17.95■□□□□ 0.46
CPSF4-210ENST00000469897 SRP68Q9UHB9 627 aaKnown RBP17.95■□□□□ 0.46
CPSF4-210ENST00000469897 PARP3Q9Y6F1 533 aa17.95■□□□□ 0.46
CPSF4-210ENST00000469897 SENP3-EIF4A1A0A087X0R7 540 aa17.94■□□□□ 0.46
CPSF4-210ENST00000469897 CCDC87Q9NVE4 849 aa17.93■□□□□ 0.46
CPSF4-210ENST00000469897 FKBP8Q14318 412 aa17.92■□□□□ 0.46
CPSF4-210ENST00000469897 ZNF526Q8TF50 670 aaPredicted RBP17.92■□□□□ 0.46
CPSF4-210ENST00000469897 UBR3Q6ZT12 1888 aa17.91■□□□□ 0.46
CPSF4-210ENST00000469897 DPEP1P16444 411 aa17.91■□□□□ 0.46
CPSF4-210ENST00000469897 BCS1LQ9Y276 419 aa17.91■□□□□ 0.46
CPSF4-210ENST00000469897 GOLGB1Q14789 3259 aaKnown RBP17.9■□□□□ 0.46
CPSF4-210ENST00000469897 CYP19A1P11511 503 aaPredicted RBP17.9■□□□□ 0.46
CPSF4-210ENST00000469897 GPBP1L1Q9HC44 474 aaPredicted RBP17.9■□□□□ 0.46
CPSF4-210ENST00000469897 ATP10DQ9P241 1426 aa17.89■□□□□ 0.46
CPSF4-210ENST00000469897 IL17REQ8NFR9 667 aa17.89■□□□□ 0.45
CPSF4-210ENST00000469897 USP42Q9H9J4 1324 aaKnown RBP17.89■□□□□ 0.45
CPSF4-210ENST00000469897 ZPR1O75312 459 aa17.88■□□□□ 0.45
CPSF4-210ENST00000469897 USPL1Q5W0Q7 1092 aa17.88■□□□□ 0.45
CPSF4-210ENST00000469897 ARHGAP27Q6ZUM4 889 aa17.88■□□□□ 0.45
CPSF4-210ENST00000469897 NPC1L1Q9UHC9 1359 aa17.88■□□□□ 0.45
CPSF4-210ENST00000469897 FCHSD2O94868 740 aa17.87■□□□□ 0.45
CPSF4-210ENST00000469897 KCNA3P22001 575 aa17.87■□□□□ 0.45
CPSF4-210ENST00000469897 TM4SF1P30408 202 aa17.87■□□□□ 0.45
CPSF4-210ENST00000469897 DDR1Q08345 913 aa17.87■□□□□ 0.45
CPSF4-210ENST00000469897 GNAT3A8MTJ3 354 aa17.86■□□□□ 0.45
CPSF4-210ENST00000469897 CANXP27824 592 aaKnown RBP17.86■□□□□ 0.45
CPSF4-210ENST00000469897 PXDNLA1KZ92 1463 aa17.86■□□□□ 0.45
CPSF4-210ENST00000469897 CHD4Q14839 1912 aa17.86■□□□□ 0.45
CPSF4-210ENST00000469897 SOS1Q07889 1333 aaPredicted RBP17.85■□□□□ 0.45
CPSF4-210ENST00000469897 TEFQ10587 303 aa17.85■□□□□ 0.45
CPSF4-210ENST00000469897 VSIG10Q8N0Z9 540 aa17.85■□□□□ 0.45
CPSF4-210ENST00000469897 GAS2L2Q8NHY3 880 aa17.85■□□□□ 0.45
CPSF4-210ENST00000469897 PHACTR3Q96KR7 559 aa17.85■□□□□ 0.45
CPSF4-210ENST00000469897 ZBTB1Q9Y2K1 713 aa17.85■□□□□ 0.45
CPSF4-210ENST00000469897 CICQ96RK0 1608 aaPredicted RBP17.84■□□□□ 0.45
CPSF4-210ENST00000469897 C10orf71Q711Q0 1435 aa17.84■□□□□ 0.45
CPSF4-210ENST00000469897 POLRMTO00411 1230 aaKnown RBP17.84■□□□□ 0.45
CPSF4-210ENST00000469897 TTC5Q8N0Z6 440 aa17.84■□□□□ 0.45
CPSF4-210ENST00000469897 CFAP53Q96M91 514 aa17.84■□□□□ 0.45
CPSF4-210ENST00000469897 PIM2Q9P1W9 311 aa17.84■□□□□ 0.45
CPSF4-210ENST00000469897 NARFQ9UHQ1 456 aa17.84■□□□□ 0.45
CPSF4-210ENST00000469897 ADCY9O60503 1353 aa17.83■□□□□ 0.45
CPSF4-210ENST00000469897 CHRNA5P30532 468 aa17.83■□□□□ 0.44
CPSF4-210ENST00000469897 STARD3NLO95772 234 aa17.82■□□□□ 0.44
CPSF4-210ENST00000469897 PRKAR2BP31323 418 aa17.82■□□□□ 0.44
CPSF4-210ENST00000469897 NFIXQ14938 502 aa17.82■□□□□ 0.44
CPSF4-210ENST00000469897 ZNF790Q6PG37 636 aa17.82■□□□□ 0.44
CPSF4-210ENST00000469897 ZNF496Q96IT1 587 aaPredicted RBP17.82■□□□□ 0.44
CPSF4-210ENST00000469897 BCL2L12Q9HB09 334 aa17.82■□□□□ 0.44
CPSF4-210ENST00000469897 ZNF831Q5JPB2 1677 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms