RNA–Protein interactions for RNA: ENST00000464800.5

MCF2L-220, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 720 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-220ENST00000464800 ITPK1Q13572 414 aa20.26■□□□□ 0.83
MCF2L-220ENST00000464800 IFNL2Q8IZJ0 200 aa20.26■□□□□ 0.83
MCF2L-220ENST00000464800 COL5A3P25940 1745 aaPredicted RBP20.25■□□□□ 0.83
MCF2L-220ENST00000464800 PHKG2P15735 406 aa20.25■□□□□ 0.83
MCF2L-220ENST00000464800 PLEKHG2Q9H7P9 1386 aa20.24■□□□□ 0.83
MCF2L-220ENST00000464800 PXDNLA1KZ92 1463 aa20.24■□□□□ 0.83
MCF2L-220ENST00000464800 KDRP35968 1356 aa20.23■□□□□ 0.83
MCF2L-220ENST00000464800 MMP10P09238 476 aa20.23■□□□□ 0.83
MCF2L-220ENST00000464800 ATG3Q9NT62 314 aa20.22■□□□□ 0.83
MCF2L-220ENST00000464800 C4AP0C0L4 1744 aa20.22■□□□□ 0.83
MCF2L-220ENST00000464800 POLKQ9UBT6 870 aa20.21■□□□□ 0.83
MCF2L-220ENST00000464800 C10orf71Q711Q0 1435 aa20.2■□□□□ 0.82
MCF2L-220ENST00000464800 BRCA1P38398 1863 aaKnown RBP20.2■□□□□ 0.82
MCF2L-220ENST00000464800 RTCBQ9Y3I0 505 aaKnown RBP20.2■□□□□ 0.82
MCF2L-220ENST00000464800 EIF4A2Q14240 407 aaKnown RBP20.19■□□□□ 0.82
MCF2L-220ENST00000464800 KIF3CO14782 793 aa20.18■□□□□ 0.82
MCF2L-220ENST00000464800 TRAPPC3LQ5T215 181 aa20.18■□□□□ 0.82
MCF2L-220ENST00000464800 TGFB2P61812 414 aa20.17■□□□□ 0.82
MCF2L-220ENST00000464800 NLGN1Q8N2Q7 840 aa20.17■□□□□ 0.82
MCF2L-220ENST00000464800 ERVV-2B6SEH9 535 aa20.16■□□□□ 0.82
MCF2L-220ENST00000464800 ADRA2BP18089 450 aa20.16■□□□□ 0.82
MCF2L-220ENST00000464800 TNNT2P45379 298 aaPredicted RBP20.16■□□□□ 0.82
MCF2L-220ENST00000464800 RBM42Q9BTD8 480 aaKnown RBP20.16■□□□□ 0.82
MCF2L-220ENST00000464800 BCS1LQ9Y276 419 aa20.16■□□□□ 0.82
MCF2L-220ENST00000464800 ARFGEF1Q9Y6D6 1849 aa20.16■□□□□ 0.82
MCF2L-220ENST00000464800 HSP90AB1P08238 724 aaKnown RBP20.15■□□□□ 0.82
MCF2L-220ENST00000464800 DCAF5Q96JK2 942 aa20.15■□□□□ 0.82
MCF2L-220ENST00000464800 CCDC87Q9NVE4 849 aa20.15■□□□□ 0.82
MCF2L-220ENST00000464800 CNTNAP4Q9C0A0 1308 aa20.15■□□□□ 0.82
MCF2L-220ENST00000464800 MYH14Q7Z406 1995 aaKnown RBP20.15■□□□□ 0.82
MCF2L-220ENST00000464800 KDM6AO15550 1401 aaPredicted RBP20.14■□□□□ 0.81
MCF2L-220ENST00000464800 RC3H1Q5TC82 1133 aaKnown RBP20.14■□□□□ 0.81
MCF2L-220ENST00000464800 SLC4A9Q96Q91 983 aa20.14■□□□□ 0.81
MCF2L-220ENST00000464800 A0A0G2JLW4 131 aa20.13■□□□□ 0.81
MCF2L-220ENST00000464800 RFC4P35249 363 aa20.13■□□□□ 0.81
MCF2L-220ENST00000464800 ARHGEF1Q92888 912 aaKnown RBP20.13■□□□□ 0.81
MCF2L-220ENST00000464800 POLR3GLQ9BT43 218 aa20.13■□□□□ 0.81
MCF2L-220ENST00000464800 GYS1P13807 737 aa20.12■□□□□ 0.81
MCF2L-220ENST00000464800 PARP3Q9Y6F1 533 aa20.12■□□□□ 0.81
MCF2L-220ENST00000464800 TJP1Q07157 1748 aa20.11■□□□□ 0.81
MCF2L-220ENST00000464800 RPS6KA4O75676 772 aa20.11■□□□□ 0.81
MCF2L-220ENST00000464800 DPEP1P16444 411 aa20.11■□□□□ 0.81
MCF2L-220ENST00000464800 APLP1P51693 650 aa20.11■□□□□ 0.81
MCF2L-220ENST00000464800 TRIM26Q12899 539 aaPredicted RBP20.11■□□□□ 0.81
MCF2L-220ENST00000464800 PLEKHO1Q53GL0 409 aaPredicted RBP20.11■□□□□ 0.81
MCF2L-220ENST00000464800 ZNF530Q6P9A1 599 aaPredicted RBP20.11■□□□□ 0.81
MCF2L-220ENST00000464800 ARHGAP27Q6ZUM4 889 aa20.11■□□□□ 0.81
MCF2L-220ENST00000464800 TOMM70O94826 608 aa20.1■□□□□ 0.81
MCF2L-220ENST00000464800 FCHSD2O94868 740 aa20.1■□□□□ 0.81
MCF2L-220ENST00000464800 CABP4P57796 275 aa20.1■□□□□ 0.81
MCF2L-220ENST00000464800 AMOTQ4VCS5 1084 aa20.09■□□□□ 0.81
MCF2L-220ENST00000464800 TIMELESSQ9UNS1 1208 aa20.09■□□□□ 0.81
MCF2L-220ENST00000464800 SCN11AQ9UI33 1791 aa20.08■□□□□ 0.81
MCF2L-220ENST00000464800 WDR90Q96KV7 1748 aa20.08■□□□□ 0.81
MCF2L-220ENST00000464800 C1orf141Q5JVX7 400 aa20.07■□□□□ 0.8
MCF2L-220ENST00000464800 MTHFSP49914 203 aa20.06■□□□□ 0.8
MCF2L-220ENST00000464800 NMRK2Q9NPI5 230 aa20.06■□□□□ 0.8
MCF2L-220ENST00000464800 PTCD1O75127 700 aaKnown RBP20.05■□□□□ 0.8
MCF2L-220ENST00000464800 CRKLP46109 303 aaKnown RBP20.05■□□□□ 0.8
MCF2L-220ENST00000464800 TNRC6CQ9HCJ0 1690 aaKnown RBP20.04■□□□□ 0.8
MCF2L-220ENST00000464800 ADAMTS7Q9UKP4 1686 aa20.04■□□□□ 0.8
MCF2L-220ENST00000464800 PIM2Q9P1W9 311 aa20.04■□□□□ 0.8
MCF2L-220ENST00000464800 VIRMAQ69YN4 1812 aaKnown RBP20.04■□□□□ 0.8
MCF2L-220ENST00000464800 USP42Q9H9J4 1324 aaKnown RBP20.03■□□□□ 0.8
MCF2L-220ENST00000464800 KCNA3P22001 575 aa20.03■□□□□ 0.8
MCF2L-220ENST00000464800 C9orf131Q5VYM1 1079 aa20.03■□□□□ 0.8
MCF2L-220ENST00000464800 AEBP1Q8IUX7 1158 aa20.03■□□□□ 0.8
MCF2L-220ENST00000464800 NFATC2IPQ8NCF5 419 aa20.02■□□□□ 0.8
MCF2L-220ENST00000464800 PANK3Q9H999 370 aa20.02■□□□□ 0.8
MCF2L-220ENST00000464800 SRP68Q9UHB9 627 aaKnown RBP20.02■□□□□ 0.8
MCF2L-220ENST00000464800 SBF1O95248 1867 aa20.02■□□□□ 0.8
MCF2L-220ENST00000464800 FKBP8Q14318 412 aa20.01■□□□□ 0.79
MCF2L-220ENST00000464800 DALRD3Q5D0E6 543 aaKnown RBP20.01■□□□□ 0.79
MCF2L-220ENST00000464800 C16orf71Q8IYS4 520 aaPredicted RBP20.01■□□□□ 0.79
MCF2L-220ENST00000464800 RBM46Q8TBY0 533 aaKnown RBP20.01■□□□□ 0.79
MCF2L-220ENST00000464800 KCPQ6ZWJ8 1503 aa20.01■□□□□ 0.79
MCF2L-220ENST00000464800 DDR1Q08345 913 aa20■□□□□ 0.79
MCF2L-220ENST00000464800 DNAJC5GQ8N7S2 189 aa20■□□□□ 0.79
MCF2L-220ENST00000464800 SULT6B1Q6IMI4 303 aa19.99■□□□□ 0.79
MCF2L-220ENST00000464800 MORC1Q86VD1 984 aa19.99■□□□□ 0.79
MCF2L-220ENST00000464800 AFDNP55196 1824 aaKnown RBP19.99■□□□□ 0.79
MCF2L-220ENST00000464800 KDM2BQ8NHM5 1336 aa19.99■□□□□ 0.79
MCF2L-220ENST00000464800 DLEC1Q9Y238 1755 aa19.98■□□□□ 0.79
MCF2L-220ENST00000464800 EIF4G2P78344 907 aaKnown RBP eCLIP19.98■□□□□ 0.79
MCF2L-220ENST00000464800 RNF181Q9P0P0 153 aa19.98■□□□□ 0.79
MCF2L-220ENST00000464800 CLSPNQ9HAW4 1339 aa19.98■□□□□ 0.79
MCF2L-220ENST00000464800 CHRNA5P30532 468 aa19.97■□□□□ 0.79
MCF2L-220ENST00000464800 MRC1P22897 1456 aa19.97■□□□□ 0.79
MCF2L-220ENST00000464800 NRXN2Q9P2S2 1712 aa19.96■□□□□ 0.79
MCF2L-220ENST00000464800 POLRMTO00411 1230 aaKnown RBP19.96■□□□□ 0.79
MCF2L-220ENST00000464800 FSTL1Q12841 308 aa19.96■□□□□ 0.79
MCF2L-220ENST00000464800 INTS5Q6P9B9 1019 aaKnown RBP19.96■□□□□ 0.79
MCF2L-220ENST00000464800 ZPR1O75312 459 aa19.95■□□□□ 0.78
MCF2L-220ENST00000464800 HSPA5P11021 654 aaKnown RBP19.95■□□□□ 0.78
MCF2L-220ENST00000464800 IL13P35225 146 aa19.94■□□□□ 0.78
MCF2L-220ENST00000464800 AKAP4Q5JQC9 854 aa19.94■□□□□ 0.78
MCF2L-220ENST00000464800 SOS1Q07889 1333 aaPredicted RBP19.94■□□□□ 0.78
MCF2L-220ENST00000464800 TIAM2Q8IVF5 1701 aa19.93■□□□□ 0.78
MCF2L-220ENST00000464800 TM4SF1P30408 202 aa19.93■□□□□ 0.78
MCF2L-220ENST00000464800 USPL1Q5W0Q7 1092 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms