RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TMEM229AB2RXF0 380 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 GNRH1P01148 92 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 RHOQP17081 205 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 GDF10P55107 478 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 SIRT1Q96EB6 747 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 RASA1P20936 1047 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 PLEKHM2Q8IWE5 1019 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS13A-208ENST00000423463 KIFC2Q96AC6 838 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 CCDC97Q96F63 343 aaPredicted RBP4.41□□□□□ -1.7
VPS13A-208ENST00000423463 NLRP3Q96P20 1036 aa4.41□□□□□ -1.7
VPS13A-208ENST00000423463 SLC27A3Q5K4L6 730 aa4.4□□□□□ -1.7
VPS13A-208ENST00000423463 ESYT1Q9BSJ8 1104 aa4.4□□□□□ -1.7
VPS13A-208ENST00000423463 WIZO95785 1651 aa4.4□□□□□ -1.71
VPS13A-208ENST00000423463 TLR1Q15399 786 aa4.4□□□□□ -1.71
VPS13A-208ENST00000423463 KANK4Q5T7N3 995 aaPredicted RBP4.4□□□□□ -1.71
VPS13A-208ENST00000423463 CCDC102BQ68D86 513 aa4.4□□□□□ -1.71
VPS13A-208ENST00000423463 USP3Q9Y6I4 520 aa4.4□□□□□ -1.71
VPS13A-208ENST00000423463 INHAP05111 366 aa4.39□□□□□ -1.71
VPS13A-208ENST00000423463 CENPCQ03188 943 aa4.39□□□□□ -1.71
VPS13A-208ENST00000423463 PTSQ03393 145 aa4.39□□□□□ -1.71
VPS13A-208ENST00000423463 DNAAF2Q9NVR5 837 aaKnown RBP4.39□□□□□ -1.71
VPS13A-208ENST00000423463 TBCELQ5QJ74 424 aa4.39□□□□□ -1.71
VPS13A-208ENST00000423463 ZNF775Q96BV0 537 aaPredicted RBP4.39□□□□□ -1.71
VPS13A-208ENST00000423463 SENP3-EIF4A1A0A087X0R7 540 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 SFI1A8K8P3 1242 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 ZBTB7BO15156 539 aaPredicted RBP4.38□□□□□ -1.71
VPS13A-208ENST00000423463 PHKA2P46019 1235 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 POU4F2Q12837 409 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.38□□□□□ -1.71
VPS13A-208ENST00000423463 LYSMD3Q7Z3D4 306 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 TSEN2Q8NCE0 465 aaKnown RBP4.38□□□□□ -1.71
VPS13A-208ENST00000423463 GAS2L2Q8NHY3 880 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 TRIM52Q96A61 297 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 ZNF358Q9NW07 568 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L15C9J2P7 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L10C9JJH3 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L13C9JLJ4 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L12C9JPN9 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L11C9JVI0 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L21D6R901 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L18D6R9N7 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L22D6RA61 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L17D6RBQ6 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L19D6RCP7 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L20D6RJB6 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 RNF144AP50876 292 aaPredicted RBP4.38□□□□□ -1.71
VPS13A-208ENST00000423463 USP17L24Q0WX57 530 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 ESCO1Q5FWF5 840 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 TRIM50Q86XT4 487 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 ZSCAN10Q96SZ4 725 aaPredicted RBP4.38□□□□□ -1.71
VPS13A-208ENST00000423463 FHDC1Q9C0D6 1143 aaPredicted RBP4.38□□□□□ -1.71
VPS13A-208ENST00000423463 VRTNQ9H8Y1 702 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 HRH3Q9Y5N1 445 aa4.38□□□□□ -1.71
VPS13A-208ENST00000423463 LZTS3O60299 673 aaPredicted RBP4.37□□□□□ -1.71
VPS13A-208ENST00000423463 ATP1A2P50993 1020 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 PTK7Q13308 1070 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 TNS4Q8IZW8 715 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 TOP2AP11388 1531 aaKnown RBP4.37□□□□□ -1.71
VPS13A-208ENST00000423463 DKK1O94907 266 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 DPYDQ12882 1025 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 TMEM214Q6NUQ4 689 aaKnown RBP4.37□□□□□ -1.71
VPS13A-208ENST00000423463 XAGE2Q96GT9 111 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 SERPINA10Q9UK55 444 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 PARP3Q9Y6F1 533 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 CADPSQ9ULU8 1353 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 GRIP2Q9C0E4 1043 aa4.37□□□□□ -1.71
VPS13A-208ENST00000423463 FAM196BA6NMK8 535 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 GPC1P35052 558 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 SMTNP53814 917 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 LARP1Q6PKG0 1096 aaKnown RBP4.36□□□□□ -1.71
VPS13A-208ENST00000423463 SIX5Q8N196 739 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 LARGE2Q8N3Y3 721 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 STK32AQ8WU08 396 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 TSPAN10Q9H1Z9 355 aaPredicted RBP4.36□□□□□ -1.71
VPS13A-208ENST00000423463 GPAMQ9HCL2 828 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 NXF1Q9UBU9 619 aaKnown RBP4.36□□□□□ -1.71
VPS13A-208ENST00000423463 A6NJY4 79 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 WASLO00401 505 aaPredicted RBP4.36□□□□□ -1.71
VPS13A-208ENST00000423463 PLA2G4AP47712 749 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 C4orf17Q53FE4 359 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 LCE2CQ5TA81 110 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 NBPF10Q6P3W6 841 aaKnown RBP4.36□□□□□ -1.71
VPS13A-208ENST00000423463 NBPF15Q8N660 670 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 CCDC155Q8N6L0 562 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 ZMIZ1Q9ULJ6 1067 aa4.36□□□□□ -1.71
VPS13A-208ENST00000423463 EPHA4P54764 986 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 SRPK2P78362 688 aaKnown RBP4.35□□□□□ -1.71
VPS13A-208ENST00000423463 SH3PXD2AQ5TCZ1 1133 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 TAS1R3Q7RTX0 852 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 ARXQ96QS3 562 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 GAS2L1Q99501 681 aaPredicted RBP4.35□□□□□ -1.71
VPS13A-208ENST00000423463 IQSEC3Q9UPP2 1182 aaPredicted RBP4.35□□□□□ -1.71
VPS13A-208ENST00000423463 NESP48681 1621 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 PDS5BQ9NTI5 1447 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 LAMC3Q9Y6N6 1575 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 ANKMY2Q8IV38 441 aa4.35□□□□□ -1.71
VPS13A-208ENST00000423463 CUEDC1Q9NWM3 386 aaPredicted RBP4.35□□□□□ -1.71
VPS13A-208ENST00000423463 SCHIP1Q9P0W5 487 aaPredicted RBP4.35□□□□□ -1.71
VPS13A-208ENST00000423463 NOVA2Q9UNW9 492 aaKnown RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms