RNA–Protein interactions for RNA: ENST00000404424.5

CLIP4-204, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP4, Length 2,480 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-204ENST00000404424 FLIIQ13045 1269 aa13.14□□□□□ -0.31
CLIP4-204ENST00000404424 NGDNQ8NEJ9 315 aaKnown RBP13.14□□□□□ -0.31
CLIP4-204ENST00000404424 AMOTL2Q9Y2J4 779 aa13.14□□□□□ -0.31
CLIP4-204ENST00000404424 TBX22Q9Y458 520 aa13.14□□□□□ -0.31
CLIP4-204ENST00000404424 LRRC37A3O60309 1634 aa13.14□□□□□ -0.31
CLIP4-204ENST00000404424 MCCP23508 829 aa13.14□□□□□ -0.31
CLIP4-204ENST00000404424 NASPP49321 788 aaPredicted RBP13.14□□□□□ -0.31
CLIP4-204ENST00000404424 PPP1R9BQ96SB3 815 aa13.14□□□□□ -0.31
CLIP4-204ENST00000404424 SRCIN1Q9C0H9 1055 aa13.14□□□□□ -0.31
CLIP4-204ENST00000404424 GNAT3A8MTJ3 354 aa13.13□□□□□ -0.31
CLIP4-204ENST00000404424 ANAPC15P60006 121 aa13.13□□□□□ -0.31
CLIP4-204ENST00000404424 CEP170BQ9Y4F5 1589 aaPredicted RBP13.13□□□□□ -0.31
CLIP4-204ENST00000404424 CACNA1FO60840 1977 aa13.13□□□□□ -0.31
CLIP4-204ENST00000404424 PXDNLA1KZ92 1463 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 EPB41L2O43491 1005 aaKnown RBP13.12□□□□□ -0.31
CLIP4-204ENST00000404424 MX1P20591 662 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 FKBP5Q13451 457 aaPredicted RBP13.12□□□□□ -0.31
CLIP4-204ENST00000404424 SLC26A8Q96RN1 970 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 ESYT1Q9BSJ8 1104 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 STAP2Q9UGK3 403 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 EXOC6BQ9Y2D4 811 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 AOX1Q06278 1338 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 AK9Q5TCS8 1911 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 ZGPATQ8N5A5 531 aaKnown RBP13.12□□□□□ -0.31
CLIP4-204ENST00000404424 IL17RAQ96F46 866 aa13.12□□□□□ -0.31
CLIP4-204ENST00000404424 SLIT1O75093 1534 aa13.11□□□□□ -0.31
CLIP4-204ENST00000404424 RIMS1Q86UR5 1692 aaKnown RBP13.11□□□□□ -0.31
CLIP4-204ENST00000404424 KIF13AQ9H1H9 1805 aa13.11□□□□□ -0.31
CLIP4-204ENST00000404424 ARHGAP23Q9P227 1491 aa13.11□□□□□ -0.31
CLIP4-204ENST00000404424 FAM208AQ9UK61 1670 aaKnown RBP13.11□□□□□ -0.31
CLIP4-204ENST00000404424 DIP2AQ14689 1571 aa13.11□□□□□ -0.31
CLIP4-204ENST00000404424 XRN1Q8IZH2 1706 aaKnown RBP13.11□□□□□ -0.31
CLIP4-204ENST00000404424 PKP1Q13835 747 aa13.11□□□□□ -0.31
CLIP4-204ENST00000404424 PIK3C2AO00443 1686 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 NEK4P51957 841 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 TAF7Q15545 349 aaPredicted RBP13.1□□□□□ -0.31
CLIP4-204ENST00000404424 ZDHHC9Q9Y397 364 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 ANKARQ7Z5J8 1434 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 TUBGCP6Q96RT7 1819 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 N4BP2Q86UW6 1770 aaPredicted RBP13.1□□□□□ -0.31
CLIP4-204ENST00000404424 PNMA6EA0A0J9YXQ4 647 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 CHMLP26374 656 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 NLRP6P59044 892 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 CUL4AQ13619 759 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 ZSCAN23Q3MJ62 389 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 CAVIN1Q6NZI2 390 aaKnown RBP13.1□□□□□ -0.31
CLIP4-204ENST00000404424 INTS4Q96HW7 963 aaKnown RBP13.1□□□□□ -0.31
CLIP4-204ENST00000404424 TMX3Q96JJ7 454 aa13.1□□□□□ -0.31
CLIP4-204ENST00000404424 MAP3K5Q99683 1374 aa13.09□□□□□ -0.31
CLIP4-204ENST00000404424 ERBB4Q15303 1308 aa13.09□□□□□ -0.31
CLIP4-204ENST00000404424 NCLP19338 710 aaKnown RBP13.09□□□□□ -0.31
CLIP4-204ENST00000404424 HOXC9P31274 260 aa13.09□□□□□ -0.31
CLIP4-204ENST00000404424 NAP1L5Q96NT1 182 aaPredicted RBP13.09□□□□□ -0.31
CLIP4-204ENST00000404424 RAB11FIP3O75154 756 aa13.08□□□□□ -0.32
CLIP4-204ENST00000404424 PRPF40AO75400 957 aaKnown RBP13.08□□□□□ -0.32
CLIP4-204ENST00000404424 CHMP4AQ9BY43 222 aa13.08□□□□□ -0.32
CLIP4-204ENST00000404424 USP54Q70EL1 1684 aa13.08□□□□□ -0.32
CLIP4-204ENST00000404424 TRIM6-TRIM34B2RNG4 842 aa13.07□□□□□ -0.32
CLIP4-204ENST00000404424 HS1BP3Q53T59 392 aa13.07□□□□□ -0.32
CLIP4-204ENST00000404424 IL17REQ8NFR9 667 aa13.07□□□□□ -0.32
CLIP4-204ENST00000404424 LRRFIP2Q9Y608 721 aaKnown RBP13.07□□□□□ -0.32
CLIP4-204ENST00000404424 NWD1Q149M9 1564 aa13.07□□□□□ -0.32
CLIP4-204ENST00000404424 UBTFL1P0CB47 393 aaPredicted RBP13.07□□□□□ -0.32
CLIP4-204ENST00000404424 SSH3Q8TE77 659 aa13.07□□□□□ -0.32
CLIP4-204ENST00000404424 RILPL2Q969X0 211 aa13.07□□□□□ -0.32
CLIP4-204ENST00000404424 USP44Q9H0E7 712 aa13.07□□□□□ -0.32
CLIP4-204ENST00000404424 BRD1O95696 1058 aa13.06□□□□□ -0.32
CLIP4-204ENST00000404424 MBD3O95983 291 aa13.06□□□□□ -0.32
CLIP4-204ENST00000404424 ANO2Q9NQ90 1003 aa13.06□□□□□ -0.32
CLIP4-204ENST00000404424 RGPD8O14715 1765 aaPredicted RBP13.06□□□□□ -0.32
CLIP4-204ENST00000404424 TSHZ3Q63HK5 1081 aa13.06□□□□□ -0.32
CLIP4-204ENST00000404424 ZSCAN30Q86W11 494 aa13.06□□□□□ -0.32
CLIP4-204ENST00000404424 GPT2Q8TD30 523 aa13.06□□□□□ -0.32
CLIP4-204ENST00000404424 HDGFL1Q5TGJ6 251 aa13.05□□□□□ -0.32
CLIP4-204ENST00000404424 THEMISQ8N1K5 641 aaPredicted RBP13.05□□□□□ -0.32
CLIP4-204ENST00000404424 HOXB7P09629 217 aa13.04□□□□□ -0.32
CLIP4-204ENST00000404424 LRSAM1Q6UWE0 723 aa13.04□□□□□ -0.32
CLIP4-204ENST00000404424 NECTIN2Q92692 538 aa13.04□□□□□ -0.32
CLIP4-204ENST00000404424 POLA2Q14181 598 aa13.04□□□□□ -0.32
CLIP4-204ENST00000404424 PALD1Q9ULE6 856 aa13.04□□□□□ -0.32
CLIP4-204ENST00000404424 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
CLIP4-204ENST00000404424 CEBPAP49715 358 aaPredicted RBP13.03□□□□□ -0.32
CLIP4-204ENST00000404424 PDLIM2Q96JY6 352 aa13.03□□□□□ -0.32
CLIP4-204ENST00000404424 CEMIPQ8WUJ3 1361 aa13.03□□□□□ -0.32
CLIP4-204ENST00000404424 MARF1Q9Y4F3 1742 aaKnown RBP13.03□□□□□ -0.32
CLIP4-204ENST00000404424 ABTB2Q8N961 1025 aa13.03□□□□□ -0.32
CLIP4-204ENST00000404424 RBSNQ9H1K0 784 aa13.03□□□□□ -0.32
CLIP4-204ENST00000404424 MSNP26038 577 aaKnown RBP13.02□□□□□ -0.32
CLIP4-204ENST00000404424 HSPA4P34932 840 aa13.02□□□□□ -0.32
CLIP4-204ENST00000404424 PLPPR3Q6T4P5 718 aa13.02□□□□□ -0.32
CLIP4-204ENST00000404424 KIF1BPQ96EK5 621 aa13.02□□□□□ -0.32
CLIP4-204ENST00000404424 HSP90AB4PQ58FF6 505 aa13.02□□□□□ -0.33
CLIP4-204ENST00000404424 PPP1R42Q7Z4L9 355 aa13.02□□□□□ -0.33
CLIP4-204ENST00000404424 UNC5CLQ8IV45 518 aa13.02□□□□□ -0.33
CLIP4-204ENST00000404424 RHPN1Q8TCX5 695 aa13.02□□□□□ -0.33
CLIP4-204ENST00000404424 TMEM63CQ9P1W3 806 aa13.02□□□□□ -0.33
CLIP4-204ENST00000404424 SURF6O75683 361 aaKnown RBP13.01□□□□□ -0.33
CLIP4-204ENST00000404424 PHAXQ9H814 394 aaKnown RBP13.01□□□□□ -0.33
CLIP4-204ENST00000404424 RBM27Q9P2N5 1060 aaKnown RBP13.01□□□□□ -0.33
CLIP4-204ENST00000404424 SYAP1Q96A49 352 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms