RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 ZNF396Q96N95 335 aaPredicted RBP3.22□□□□□ -1.89
CHD9-202ENST00000398510 POLR3GO15318 223 aaPredicted RBP3.21□□□□□ -1.89
CHD9-202ENST00000398510 TUBB4BP68371 445 aa3.21□□□□□ -1.89
CHD9-202ENST00000398510 CC2D1BQ5T0F9 858 aaKnown RBP3.21□□□□□ -1.89
CHD9-202ENST00000398510 OLFM4Q6UX06 510 aa3.21□□□□□ -1.89
CHD9-202ENST00000398510 RNF41Q9H4P4 317 aaPredicted RBP3.21□□□□□ -1.89
CHD9-202ENST00000398510 MAGEC2Q9UBF1 373 aaPredicted RBP3.21□□□□□ -1.89
CHD9-202ENST00000398510 U3KPZ7 1027 aaPredicted RBP3.21□□□□□ -1.89
CHD9-202ENST00000398510 CLTCQ00610 1675 aaKnown RBP3.21□□□□□ -1.89
CHD9-202ENST00000398510 BRDTQ58F21 947 aaPredicted RBP3.21□□□□□ -1.9
CHD9-202ENST00000398510 BMP2KQ9NSY1 1161 aaPredicted RBP3.21□□□□□ -1.9
CHD9-202ENST00000398510 ABCD1P33897 745 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 CCDC14Q49A88 953 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 PLCD3Q8N3E9 789 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 MSANTD4Q8NCY6 345 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 CCT4P50991 539 aaKnown RBP3.21□□□□□ -1.9
CHD9-202ENST00000398510 TRIML1Q8N9V2 468 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 MPHOSPH8Q99549 860 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 PLCD4Q9BRC7 762 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 SLC5A4Q9NY91 659 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 ANKRD26Q9UPS8 1709 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 PTPRKQ15262 1439 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 IKQ13123 557 aaPredicted RBP3.21□□□□□ -1.9
CHD9-202ENST00000398510 HSP90AB2PQ58FF8 381 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 BICD2Q8TD16 824 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 MPHOSPH9Q99550 1183 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 GLT8D2Q9H1C3 349 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 SSX2IPQ9Y2D8 614 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 CEP170Q5SW79 1584 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 CTNNA3Q9UI47 895 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 CAVIN2O95810 425 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 LRSAM1Q6UWE0 723 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 ZNF397Q8NF99 534 aaPredicted RBP3.21□□□□□ -1.9
CHD9-202ENST00000398510 NPHP3Q7Z494 1330 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 FILIP1LQ4L180 1135 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 CAVIN4Q5BKX8 364 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 CDC37L1Q7L3B6 337 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 NYXQ9GZU5 481 aa3.21□□□□□ -1.9
CHD9-202ENST00000398510 NPM3O75607 178 aaKnown RBP3.21□□□□□ -1.9
CHD9-202ENST00000398510 MAP3K4Q9Y6R4 1608 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 CLUL1Q15846 466 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 NBPF8Q3BBV2 869 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 NBPF14Q5TI25 921 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 NFXL1Q6ZNB6 911 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 SEPT11Q9NVA2 429 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 MAST3O60307 1309 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 NAP1L1P55209 391 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 ZKSCAN2Q63HK3 967 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 CCDC73Q6ZRK6 1079 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 LRRC27Q9C0I9 530 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 NALCNQ8IZF0 1738 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 PRC1O43663 620 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 SLU7O95391 586 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 POLD1P28340 1107 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 IGHMBP2P38935 993 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 SNX16P57768 344 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 FILIP1Q7Z7B0 1213 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 PTPRCP08575 1304 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 APPP05067 770 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 CYB5RLQ6IPT4 315 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 CEP128Q6ZU80 1094 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 PROSER2Q86WR7 435 aaPredicted RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 OGFOD1Q8N543 542 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 RPGRQ92834 1020 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 RUNDC1Q96C34 613 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 NOL7Q9UMY1 257 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 TOM1O60784 492 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 HLA-DOAP06340 250 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 ARID4AP29374 1257 aaPredicted RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 TAOK3Q9H2K8 898 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 STK26Q9P289 416 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 ATP10AO60312 1499 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 GOLGA6L10A0A0M3HER8 536 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 ADRA2BP18089 450 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 NEUROD2Q15784 382 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 CCDC91Q7Z6B0 441 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 FOXD4L1Q9NU39 408 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.2□□□□□ -1.91e-6■■□□□ 13.9
CHD9-202ENST00000398510 ASXL1Q8IXJ9 1541 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 BMP15O95972 392 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 KRT18P05783 430 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 SMARCC1Q92922 1105 aaPredicted RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 NLRP1Q9C000 1473 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 ABCA9Q8IUA7 1624 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 MYH4Q9Y623 1939 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 KINO60870 393 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 LMOD1P29536 600 aaPredicted RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 KIF5BP33176 963 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 DZIP1Q86YF9 867 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 C22orf23Q9BZE7 217 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 RTEL1Q9NZ71 1219 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 SCAF11Q99590 1463 aaKnown RBP3.2□□□□□ -1.9
CHD9-202ENST00000398510 JAKMIP3Q5VZ66 844 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 ABTB2Q8N961 1025 aa3.2□□□□□ -1.9
CHD9-202ENST00000398510 ZBTB24O43167 697 aaPredicted RBP3.19□□□□□ -1.9
CHD9-202ENST00000398510 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.19□□□□□ -1.9
CHD9-202ENST00000398510 SPATA32Q96LK8 384 aa3.19□□□□□ -1.9
CHD9-202ENST00000398510 EFCAB6Q5THR3 1501 aa3.19□□□□□ -1.9
CHD9-202ENST00000398510 UBTFL1P0CB47 393 aaPredicted RBP3.19□□□□□ -1.9
CHD9-202ENST00000398510 PPP4R3CPQ6ZMV5 832 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms