RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 MPNDQ8N594 471 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 KIF21BO75037 1637 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 GLRX3O76003 335 aaKnown RBP13.45□□□□□ -0.26
VCL-202ENST00000372755 MAP9Q49MG5 647 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 ANO10Q9NW15 660 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 SFPQP23246 707 aaKnown RBP eCLIP13.44□□□□□ -0.26
VCL-202ENST00000372755 DDX11Q96FC9 970 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 POLR3DP05423 398 aaPredicted RBP13.44□□□□□ -0.26
VCL-202ENST00000372755 ANAPC15P60006 121 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 TMCO3Q6UWJ1 677 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 RAB34Q9BZG1 259 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 KIF20AO95235 890 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 IFIT1P09914 478 aaKnown RBP13.44□□□□□ -0.26
VCL-202ENST00000372755 BICDL1Q6ZP65 573 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 NUTM1Q86Y26 1132 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 KCNH5Q8NCM2 988 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 ABCF2Q9UG63 623 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 SHTN1A0MZ66 631 aa13.44□□□□□ -0.26
VCL-202ENST00000372755 MAP2K1Q02750 393 aaPredicted RBP13.44□□□□□ -0.26
VCL-202ENST00000372755 KIF5CO60282 957 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 CRACR2BQ8N4Y2 399 aaPredicted RBP13.43□□□□□ -0.26
VCL-202ENST00000372755 DYDC1Q8WWB3 177 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 SCAND2PQ9GZW5 306 aaPredicted RBP13.43□□□□□ -0.26
VCL-202ENST00000372755 C9orf84Q5VXU9 1444 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 HMGB1P09429 215 aaKnown RBP13.43□□□□□ -0.26
VCL-202ENST00000372755 MX1P20591 662 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 SPINK5Q9NQ38 1064 aaPredicted RBP13.43□□□□□ -0.26
VCL-202ENST00000372755 TAF3Q5VWG9 929 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 CACNA2D4Q7Z3S7 1137 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 MKNK2Q9HBH9 465 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 SH2B1Q9NRF2 756 aaPredicted RBP13.43□□□□□ -0.26
VCL-202ENST00000372755 AKNAQ7Z591 1439 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 PLEKHH1Q9ULM0 1364 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 TMEM266Q2M3C6 531 aa13.43□□□□□ -0.26
VCL-202ENST00000372755 LARP1Q6PKG0 1096 aaKnown RBP13.42□□□□□ -0.26
VCL-202ENST00000372755 SCLT1Q96NL6 688 aa13.42□□□□□ -0.26
VCL-202ENST00000372755 CTCFLQ8NI51 663 aaPredicted RBP13.42□□□□□ -0.26
VCL-202ENST00000372755 EHMT1Q9H9B1 1298 aa13.42□□□□□ -0.26
VCL-202ENST00000372755 STAMBPO95630 424 aa13.42□□□□□ -0.26
VCL-202ENST00000372755 CASQ1P31415 396 aa13.42□□□□□ -0.26
VCL-202ENST00000372755 RRS1Q15050 365 aaKnown RBP13.42□□□□□ -0.26
VCL-202ENST00000372755 CCDC150Q8NCX0 1101 aa13.42□□□□□ -0.26
VCL-202ENST00000372755 CUL5Q93034 780 aa13.42□□□□□ -0.26
VCL-202ENST00000372755 WDHD1O75717 1129 aaPredicted RBP13.42□□□□□ -0.26
VCL-202ENST00000372755 PTPN14Q15678 1187 aa13.42□□□□□ -0.26
VCL-202ENST00000372755 ESPNB1AK53 854 aa13.41□□□□□ -0.26
VCL-202ENST00000372755 CCDC83Q8IWF9 413 aa13.41□□□□□ -0.26
VCL-202ENST00000372755 NAPBQ9H115 298 aa13.41□□□□□ -0.26
VCL-202ENST00000372755 CAMK4Q16566 473 aa13.41□□□□□ -0.26
VCL-202ENST00000372755 CCDC183Q5T5S1 534 aa13.41□□□□□ -0.26
VCL-202ENST00000372755 PRPF40BQ6NWY9 871 aaKnown RBP13.41□□□□□ -0.26
VCL-202ENST00000372755 AQRO60306 1485 aaKnown RBP eCLIP13.4□□□□□ -0.265e-7■■■□□ 18.9
VCL-202ENST00000372755 SYCE3A1L190 88 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 CTAGE5O15320 804 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 MAP3K12Q12852 859 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 LUZP1Q86V48 1076 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 GOLGA6L10A0A0M3HER8 536 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 GCOM1H8Y6P7 765 aaPredicted RBP13.4□□□□□ -0.26
VCL-202ENST00000372755 USO1O60763 962 aaKnown RBP13.4□□□□□ -0.26
VCL-202ENST00000372755 MYZAPP0CAP1 466 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 TMEM57Q8N5G2 664 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 TOP1P11387 765 aaKnown RBP13.4□□□□□ -0.26
VCL-202ENST00000372755 C8orf76Q96K31 380 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 CCDC85AQ96PX6 553 aaPredicted RBP13.4□□□□□ -0.26
VCL-202ENST00000372755 GRIN2BQ13224 1484 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 POGZQ7Z3K3 1410 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 MINDY4BA8MYZ0 360 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 ZSCAN30Q86W11 494 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 RNF41Q9H4P4 317 aaPredicted RBP13.4□□□□□ -0.26
VCL-202ENST00000372755 SLF2Q8IX21 1173 aa13.4□□□□□ -0.26
VCL-202ENST00000372755 ZPR1O75312 459 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 TMPOP42166 694 aaKnown RBP13.39□□□□□ -0.27
VCL-202ENST00000372755 DUSP27Q5VZP5 1158 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 CCDC178Q5BJE1 867 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 DZIP1Q86YF9 867 aaKnown RBP13.39□□□□□ -0.27
VCL-202ENST00000372755 TMOD3Q9NYL9 352 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 EXOC6BQ9Y2D4 811 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 IQCA1Q86XH1 822 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 CCDC113Q9H0I3 377 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 KIF18AQ8NI77 898 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 EHBP1L1Q8N3D4 1523 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 ERICH3Q5RHP9 1530 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 GSTTP1A0A1W2PQM5 241 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 SLC5A1P13866 664 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 IFFO1Q0D2I5 559 aa13.39□□□□□ -0.27
VCL-202ENST00000372755 SMC1AQ14683 1233 aaKnown RBP13.39□□□□□ -0.27
VCL-202ENST00000372755 ZNF444Q8N0Y2 327 aaPredicted RBP13.39□□□□□ -0.27
VCL-202ENST00000372755 PRG4Q92954 1404 aaPredicted RBP13.38□□□□□ -0.27
VCL-202ENST00000372755 YEATS4O95619 227 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 PAFAH1B1P43034 410 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 KIF4BQ2VIQ3 1234 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 ALDH1L2Q3SY69 923 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 HOOK3Q86VS8 718 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 SLC12A7Q9Y666 1083 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 SSRP1Q08945 709 aaKnown RBP13.38□□□□□ -0.27
VCL-202ENST00000372755 UBA5Q9GZZ9 404 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
VCL-202ENST00000372755 SLFN5Q08AF3 891 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 FERMT3Q86UX7 667 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 IBSPP21815 317 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms