RNA–Protein interactions for RNA: ENST00000370361.5

VMA21-202, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 5 BASIC

Gene VMA21, Length 693 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-202ENST00000370361 ATG3Q9NT62 314 aa21.92■■□□□ 1.1
VMA21-202ENST00000370361 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.91■■□□□ 1.1
VMA21-202ENST00000370361 GRIN3BO60391 1043 aa21.9■■□□□ 1.1
VMA21-202ENST00000370361 MTHFSP49914 203 aa21.9■■□□□ 1.1
VMA21-202ENST00000370361 CABP4P57796 275 aa21.9■■□□□ 1.1
VMA21-202ENST00000370361 SULT6B1Q6IMI4 303 aa21.9■■□□□ 1.1
VMA21-202ENST00000370361 LINC00116Q8NCU8 138 aa21.9■■□□□ 1.1
VMA21-202ENST00000370361 KDM6AO15550 1401 aaPredicted RBP21.89■■□□□ 1.1
VMA21-202ENST00000370361 UTRNP46939 3433 aa21.89■■□□□ 1.1
VMA21-202ENST00000370361 PER1O15534 1290 aaPredicted RBP21.89■■□□□ 1.09
VMA21-202ENST00000370361 GNPATO15228 680 aa21.88■■□□□ 1.09
VMA21-202ENST00000370361 ADRA2BP18089 450 aa21.88■■□□□ 1.09
VMA21-202ENST00000370361 RC3H1Q5TC82 1133 aaKnown RBP21.88■■□□□ 1.09
VMA21-202ENST00000370361 MSL1Q68DK7 614 aa21.88■■□□□ 1.09
VMA21-202ENST00000370361 ITPK1Q13572 414 aa21.87■■□□□ 1.09
VMA21-202ENST00000370361 AEBP1Q8IUX7 1158 aa21.87■■□□□ 1.09
VMA21-202ENST00000370361 CNTNAP4Q9C0A0 1308 aa21.86■■□□□ 1.09
VMA21-202ENST00000370361 PHF14O94880 888 aa21.86■■□□□ 1.09
VMA21-202ENST00000370361 NLGN2Q8NFZ4 835 aa21.86■■□□□ 1.09
VMA21-202ENST00000370361 RTCBQ9Y3I0 505 aaKnown RBP21.86■■□□□ 1.09
VMA21-202ENST00000370361 AKAP4Q5JQC9 854 aa21.85■■□□□ 1.09
VMA21-202ENST00000370361 ZNF784Q8NCA9 323 aaPredicted RBP21.85■■□□□ 1.09
VMA21-202ENST00000370361 CICQ96RK0 1608 aaPredicted RBP21.84■■□□□ 1.09
VMA21-202ENST00000370361 COL5A3P25940 1745 aaPredicted RBP21.84■■□□□ 1.09
VMA21-202ENST00000370361 SCN11AQ9UI33 1791 aa21.84■■□□□ 1.09
VMA21-202ENST00000370361 DIAPH1O60610 1272 aaKnown RBP21.83■■□□□ 1.09
VMA21-202ENST00000370361 TRAPPC3LQ5T215 181 aa21.83■■□□□ 1.09
VMA21-202ENST00000370361 RBM42Q9BTD8 480 aaKnown RBP21.83■■□□□ 1.09
VMA21-202ENST00000370361 AMIGO3Q86WK7 504 aa21.82■■□□□ 1.08
VMA21-202ENST00000370361 PELP1Q8IZL8 1130 aaKnown RBP21.82■■□□□ 1.08
VMA21-202ENST00000370361 NLGN1Q8N2Q7 840 aa21.81■■□□□ 1.08
VMA21-202ENST00000370361 CC2D1BQ5T0F9 858 aaKnown RBP21.8■■□□□ 1.08
VMA21-202ENST00000370361 MRC1P22897 1456 aa21.79■■□□□ 1.08
VMA21-202ENST00000370361 RPS6KA4O75676 772 aa21.79■■□□□ 1.08
VMA21-202ENST00000370361 NFATC2IPQ8NCF5 419 aa21.79■■□□□ 1.08
VMA21-202ENST00000370361 SLC4A9Q96Q91 983 aa21.78■■□□□ 1.08
VMA21-202ENST00000370361 GOLGB1Q14789 3259 aaKnown RBP21.77■■□□□ 1.08
VMA21-202ENST00000370361 RFC4P35249 363 aa21.77■■□□□ 1.08
VMA21-202ENST00000370361 SLC52A2Q9HAB3 445 aa21.77■■□□□ 1.08
VMA21-202ENST00000370361 YBX3P16989 372 aaKnown RBP eCLIP21.76■■□□□ 1.072e-7■□□□□ 10.5
VMA21-202ENST00000370361 ADAMTS7Q9UKP4 1686 aa21.75■■□□□ 1.07
VMA21-202ENST00000370361 PTCD1O75127 700 aaKnown RBP21.75■■□□□ 1.07
VMA21-202ENST00000370361 MMP10P09238 476 aa21.74■■□□□ 1.07
VMA21-202ENST00000370361 HMOX1P09601 288 aa21.74■■□□□ 1.07
VMA21-202ENST00000370361 ARHGEF1Q92888 912 aaKnown RBP21.74■■□□□ 1.07
VMA21-202ENST00000370361 COL3A1P02461 1466 aaPredicted RBP21.74■■□□□ 1.07
VMA21-202ENST00000370361 KIF13BQ9NQT8 1826 aa21.73■■□□□ 1.07
VMA21-202ENST00000370361 RNMTO43148 476 aaKnown RBP21.73■■□□□ 1.07
VMA21-202ENST00000370361 CRKLP46109 303 aaKnown RBP21.73■■□□□ 1.07
VMA21-202ENST00000370361 CFAP53Q96M91 514 aa21.73■■□□□ 1.07
VMA21-202ENST00000370361 TJP1Q07157 1748 aa21.72■■□□□ 1.07
VMA21-202ENST00000370361 TGFB2P61812 414 aa21.72■■□□□ 1.07
VMA21-202ENST00000370361 GAS2L2Q8NHY3 880 aa21.72■■□□□ 1.07
VMA21-202ENST00000370361 MYH14Q7Z406 1995 aaKnown RBP21.72■■□□□ 1.07
VMA21-202ENST00000370361 C4AP0C0L4 1744 aa21.72■■□□□ 1.07
VMA21-202ENST00000370361 VIRMAQ69YN4 1812 aaKnown RBP21.71■■□□□ 1.07
VMA21-202ENST00000370361 GYS1P13807 737 aa21.71■■□□□ 1.07
VMA21-202ENST00000370361 MTHFSDQ2M296 383 aaKnown RBP21.71■■□□□ 1.07
VMA21-202ENST00000370361 SMIM5Q71RC9 77 aa21.71■■□□□ 1.07
VMA21-202ENST00000370361 VSIG10Q8N0Z9 540 aa21.71■■□□□ 1.07
VMA21-202ENST00000370361 CCDC87Q9NVE4 849 aa21.71■■□□□ 1.07
VMA21-202ENST00000370361 C10orf71Q711Q0 1435 aa21.7■■□□□ 1.06
VMA21-202ENST00000370361 LGR6Q9HBX8 967 aa21.69■■□□□ 1.06
VMA21-202ENST00000370361 PARP3Q9Y6F1 533 aa21.69■■□□□ 1.06
VMA21-202ENST00000370361 NUDCQ9Y266 331 aa21.68■■□□□ 1.06
VMA21-202ENST00000370361 USP42Q9H9J4 1324 aaKnown RBP21.67■■□□□ 1.06
VMA21-202ENST00000370361 U2SURPO15042 1029 aaKnown RBP21.67■■□□□ 1.06
VMA21-202ENST00000370361 KCPQ6ZWJ8 1503 aa21.65■■□□□ 1.06
VMA21-202ENST00000370361 PXDNLA1KZ92 1463 aa21.65■■□□□ 1.06
VMA21-202ENST00000370361 GNAT3A8MTJ3 354 aa21.65■■□□□ 1.06
VMA21-202ENST00000370361 GIGYF1O75420 1035 aaPredicted RBP21.65■■□□□ 1.06
VMA21-202ENST00000370361 INTS5Q6P9B9 1019 aaKnown RBP21.65■■□□□ 1.06
VMA21-202ENST00000370361 TTC5Q8N0Z6 440 aa21.65■■□□□ 1.06
VMA21-202ENST00000370361 UBR2Q8IWV8 1755 aa21.65■■□□□ 1.06
VMA21-202ENST00000370361 TEFQ10587 303 aa21.64■■□□□ 1.05
VMA21-202ENST00000370361 SOS1Q07889 1333 aaPredicted RBP21.63■■□□□ 1.05
VMA21-202ENST00000370361 ZPR1O75312 459 aa21.63■■□□□ 1.05
VMA21-202ENST00000370361 CYP19A1P11511 503 aaPredicted RBP21.63■■□□□ 1.05
VMA21-202ENST00000370361 C1QTNF8P60827 252 aa21.63■■□□□ 1.05
VMA21-202ENST00000370361 DNAJC10Q8IXB1 793 aa21.63■■□□□ 1.05
VMA21-202ENST00000370361 TEX13AQ9BXU3 409 aaPredicted RBP21.63■■□□□ 1.05
VMA21-202ENST00000370361 ADCY9O60503 1353 aa21.62■■□□□ 1.05
VMA21-202ENST00000370361 STARD3NLO95772 234 aa21.62■■□□□ 1.05
VMA21-202ENST00000370361 KIAA1551Q9HCM1 1747 aa21.62■■□□□ 1.05
VMA21-202ENST00000370361 SLC39A6Q13433 755 aa21.61■■□□□ 1.05
VMA21-202ENST00000370361 ATP10DQ9P241 1426 aa21.6■■□□□ 1.05
VMA21-202ENST00000370361 COL15A1P39059 1388 aa21.6■■□□□ 1.05
VMA21-202ENST00000370361 CEMIPQ8WUJ3 1361 aa21.6■■□□□ 1.05
VMA21-202ENST00000370361 NARFQ9UHQ1 456 aa21.59■■□□□ 1.05
VMA21-202ENST00000370361 SIPA1L3O60292 1781 aaPredicted RBP21.59■■□□□ 1.05
VMA21-202ENST00000370361 A0A087WZG4 1122 aa21.58■■□□□ 1.05
VMA21-202ENST00000370361 FCHSD2O94868 740 aa21.58■■□□□ 1.05
VMA21-202ENST00000370361 PPP2R1AP30153 589 aa21.58■■□□□ 1.05
VMA21-202ENST00000370361 FKBP8Q14318 412 aa21.58■■□□□ 1.05
VMA21-202ENST00000370361 ZNF790Q6PG37 636 aa21.58■■□□□ 1.05
VMA21-202ENST00000370361 RSPH6AQ9H0K4 717 aa21.58■■□□□ 1.05
VMA21-202ENST00000370361 SRP68Q9UHB9 627 aaKnown RBP21.58■■□□□ 1.05
VMA21-202ENST00000370361 N4BP2Q86UW6 1770 aaPredicted RBP21.58■■□□□ 1.04
VMA21-202ENST00000370361 PRKAR2BP31323 418 aa21.57■■□□□ 1.04
VMA21-202ENST00000370361 CNGB1Q14028 1251 aaPredicted RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms