RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 SLIT3O75094 1523 aa13.41□□□□□ -0.26
TPM3-212ENST00000368533 KIF24Q5T7B8 1368 aa13.41□□□□□ -0.26
TPM3-212ENST00000368533 KIF16BQ96L93 1317 aa13.41□□□□□ -0.26
TPM3-212ENST00000368533 SOS2Q07890 1332 aaPredicted RBP13.41□□□□□ -0.26
TPM3-212ENST00000368533 TAF7Q15545 349 aaPredicted RBP13.41□□□□□ -0.26
TPM3-212ENST00000368533 LARP1Q6PKG0 1096 aaKnown RBP13.41□□□□□ -0.26
TPM3-212ENST00000368533 NAP1L5Q96NT1 182 aaPredicted RBP13.41□□□□□ -0.26
TPM3-212ENST00000368533 IPO8O15397 1037 aaKnown RBP13.4□□□□□ -0.26
TPM3-212ENST00000368533 CT47B1P0C2W7 299 aaPredicted RBP13.4□□□□□ -0.26
TPM3-212ENST00000368533 DDX54Q8TDD1 881 aaKnown RBP13.4□□□□□ -0.26
TPM3-212ENST00000368533 KAT6BQ8WYB5 2073 aa13.4□□□□□ -0.26
TPM3-212ENST00000368533 BTBD11A6QL63 1104 aa13.4□□□□□ -0.26
TPM3-212ENST00000368533 C8orf34Q49A92 452 aa13.4□□□□□ -0.26
TPM3-212ENST00000368533 NCOA3Q9Y6Q9 1424 aa13.4□□□□□ -0.26
TPM3-212ENST00000368533 A0A0G2JS52 829 aa13.39□□□□□ -0.27
TPM3-212ENST00000368533 PIP4K2AP48426 406 aaPredicted RBP13.39□□□□□ -0.27
TPM3-212ENST00000368533 ALDH1L2Q3SY69 923 aa13.39□□□□□ -0.27
TPM3-212ENST00000368533 TATP17735 454 aaPredicted RBP13.39□□□□□ -0.27
TPM3-212ENST00000368533 AKAP4Q5JQC9 854 aa13.38□□□□□ -0.27
TPM3-212ENST00000368533 BTG4Q9NY30 223 aa13.38□□□□□ -0.27
TPM3-212ENST00000368533 MEGF6O75095 1541 aa13.38□□□□□ -0.27
TPM3-212ENST00000368533 RNMTO43148 476 aaKnown RBP13.37□□□□□ -0.27
TPM3-212ENST00000368533 NFATC2IPQ8NCF5 419 aa13.37□□□□□ -0.27
TPM3-212ENST00000368533 APBB1O00213 710 aa13.37□□□□□ -0.27
TPM3-212ENST00000368533 PHAXQ9H814 394 aaKnown RBP13.37□□□□□ -0.27
TPM3-212ENST00000368533 USP54Q70EL1 1684 aa13.37□□□□□ -0.27
TPM3-212ENST00000368533 FKBP5Q13451 457 aaPredicted RBP13.37□□□□□ -0.27
TPM3-212ENST00000368533 HSP90AA2PQ14568 343 aaPredicted RBP13.36□□□□□ -0.27
TPM3-212ENST00000368533 HDGFL1Q5TGJ6 251 aa13.36□□□□□ -0.27
TPM3-212ENST00000368533 DDX19BQ9UMR2 479 aa13.36□□□□□ -0.27
TPM3-212ENST00000368533 STK31Q9BXU1 1019 aa13.36□□□□□ -0.27
TPM3-212ENST00000368533 PHRF1Q9P1Y6 1649 aaKnown RBP13.36□□□□□ -0.27
TPM3-212ENST00000368533 CYP27B1O15528 508 aa13.35□□□□□ -0.27
TPM3-212ENST00000368533 AMOTQ4VCS5 1084 aa13.35□□□□□ -0.27
TPM3-212ENST00000368533 CAMTA1Q9Y6Y1 1673 aa13.35□□□□□ -0.27
TPM3-212ENST00000368533 CHPF2Q9P2E5 772 aa13.34□□□□□ -0.27
TPM3-212ENST00000368533 UBAP1LF5GYI3 381 aa13.33□□□□□ -0.27
TPM3-212ENST00000368533 PHKG2P15735 406 aa13.33□□□□□ -0.28
TPM3-212ENST00000368533 EIF4A1P60842 406 aaKnown RBP13.33□□□□□ -0.28
TPM3-212ENST00000368533 AIMP1Q12904 312 aaKnown RBP13.33□□□□□ -0.28
TPM3-212ENST00000368533 ZBTB40Q9NUA8 1239 aa13.33□□□□□ -0.28
TPM3-212ENST00000368533 HTATSF1O43719 755 aaKnown RBP13.33□□□□□ -0.28
TPM3-212ENST00000368533 MEIS3Q99687 375 aa13.33□□□□□ -0.28
TPM3-212ENST00000368533 PDZRN3Q9UPQ7 1066 aa13.33□□□□□ -0.28
TPM3-212ENST00000368533 A0A0U1RQG5 324 aaPredicted RBP13.32□□□□□ -0.28
TPM3-212ENST00000368533 ZBTB7BO15156 539 aaPredicted RBP13.32□□□□□ -0.28
TPM3-212ENST00000368533 PROSER3Q2NL68 480 aa13.32□□□□□ -0.28
TPM3-212ENST00000368533 SPG7Q9UQ90 795 aa13.32□□□□□ -0.28
TPM3-212ENST00000368533 CCDC9Q9Y3X0 531 aaKnown RBP13.32□□□□□ -0.28
TPM3-212ENST00000368533 FLIIQ13045 1269 aa13.32□□□□□ -0.28
TPM3-212ENST00000368533 WDR17Q8IZU2 1322 aa13.31□□□□□ -0.28
TPM3-212ENST00000368533 MYL6BP14649 208 aa13.31□□□□□ -0.28
TPM3-212ENST00000368533 API5Q9BZZ5 524 aaKnown RBP13.31□□□□□ -0.28
TPM3-212ENST00000368533 RWDD1Q9H446 243 aaPredicted RBP13.31□□□□□ -0.28
TPM3-212ENST00000368533 ROBO1Q9Y6N7 1651 aa13.31□□□□□ -0.28
TPM3-212ENST00000368533 CEMIPQ8WUJ3 1361 aa13.31□□□□□ -0.28
TPM3-212ENST00000368533 CCDC30Q5VVM6 783 aa13.31□□□□□ -0.28
TPM3-212ENST00000368533 SEC24BO95487 1268 aa13.3□□□□□ -0.28
TPM3-212ENST00000368533 IFNL2Q8IZJ0 200 aa13.3□□□□□ -0.28
TPM3-212ENST00000368533 LNPKQ9C0E8 428 aa13.3□□□□□ -0.28
TPM3-212ENST00000368533 PTCD1O75127 700 aaKnown RBP13.3□□□□□ -0.28
TPM3-212ENST00000368533 UPF2Q9HAU5 1272 aaKnown RBP13.3□□□□□ -0.28
TPM3-212ENST00000368533 ABCC4O15439 1325 aa13.3□□□□□ -0.28
TPM3-212ENST00000368533 ZCRB1Q8TBF4 217 aaKnown RBP13.29□□□□□ -0.28
TPM3-212ENST00000368533 SYTL4Q96C24 671 aaPredicted RBP13.29□□□□□ -0.28
TPM3-212ENST00000368533 COL18A1P39060 1754 aa13.29□□□□□ -0.28
TPM3-212ENST00000368533 CABP4P57796 275 aa13.29□□□□□ -0.28
TPM3-212ENST00000368533 KDM6AO15550 1401 aaPredicted RBP13.29□□□□□ -0.28
TPM3-212ENST00000368533 COL5A2P05997 1499 aaPredicted RBP13.29□□□□□ -0.28
TPM3-212ENST00000368533 HSP90AA1P07900 732 aaKnown RBP13.28□□□□□ -0.28
TPM3-212ENST00000368533 ZNF330Q9Y3S2 320 aaPredicted RBP13.28□□□□□ -0.28
TPM3-212ENST00000368533 CPDO75976 1380 aa13.28□□□□□ -0.28
TPM3-212ENST00000368533 SIRT2Q8IXJ6 389 aa13.28□□□□□ -0.28
TPM3-212ENST00000368533 ZNF496Q96IT1 587 aaPredicted RBP13.28□□□□□ -0.28
TPM3-212ENST00000368533 IL2RBP14784 551 aa13.28□□□□□ -0.28
TPM3-212ENST00000368533 SLKQ9H2G2 1235 aaPredicted RBP13.28□□□□□ -0.28
TPM3-212ENST00000368533 SLC52A2Q9HAB3 445 aa13.28□□□□□ -0.28
TPM3-212ENST00000368533 ZNF790Q6PG37 636 aa13.27□□□□□ -0.28
TPM3-212ENST00000368533 ARHGAP45Q92619 1136 aa13.27□□□□□ -0.28
TPM3-212ENST00000368533 RGS12O14924 1447 aa13.27□□□□□ -0.29
TPM3-212ENST00000368533 ANKRD45Q5TZF3 282 aa13.27□□□□□ -0.29
TPM3-212ENST00000368533 PI4KAP2A4QPH2 592 aa13.26□□□□□ -0.29
TPM3-212ENST00000368533 TTC5Q8N0Z6 440 aa13.26□□□□□ -0.29
TPM3-212ENST00000368533 PI4KAP1Q8N8J0 262 aa13.26□□□□□ -0.29
TPM3-212ENST00000368533 GIGYF1O75420 1035 aaPredicted RBP13.26□□□□□ -0.29
TPM3-212ENST00000368533 BRPF1P55201 1214 aaPredicted RBP13.26□□□□□ -0.29
TPM3-212ENST00000368533 USP16Q9Y5T5 823 aa13.26□□□□□ -0.29
TPM3-212ENST00000368533 CRYBG1Q9Y4K1 1723 aa13.26□□□□□ -0.29
TPM3-212ENST00000368533 TOM1O60784 492 aa13.26□□□□□ -0.29
TPM3-212ENST00000368533 BECN1Q14457 450 aa13.26□□□□□ -0.29
TPM3-212ENST00000368533 JARID2Q92833 1246 aaPredicted RBP13.26□□□□□ -0.29
TPM3-212ENST00000368533 LTBP4Q8N2S1 1624 aa13.25□□□□□ -0.29
TPM3-212ENST00000368533 PANK2Q9BZ23 570 aa13.25□□□□□ -0.29
TPM3-212ENST00000368533 SPRYD3Q8NCJ5 442 aa13.25□□□□□ -0.29
TPM3-212ENST00000368533 GZF1Q9H116 711 aaPredicted RBP13.25□□□□□ -0.29
TPM3-212ENST00000368533 FAM208AQ9UK61 1670 aaKnown RBP13.25□□□□□ -0.29
TPM3-212ENST00000368533 C8orf37Q96NL8 207 aa13.24□□□□□ -0.29
TPM3-212ENST00000368533 SMARCA5O60264 1052 aaPredicted RBP13.24□□□□□ -0.29
TPM3-212ENST00000368533 DCAF5Q96JK2 942 aa13.24□□□□□ -0.29
TPM3-212ENST00000368533 CARD10Q9BWT7 1032 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms