RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 CHD1LQ86WJ1 897 aa17.58■□□□□ 0.4
USF1-202ENST00000368020 CAMTA1Q9Y6Y1 1673 aa17.58■□□□□ 0.4
USF1-202ENST00000368020 FAM208AQ9UK61 1670 aaKnown RBP17.57■□□□□ 0.4
USF1-202ENST00000368020 RGS12O14924 1447 aa17.56■□□□□ 0.4
USF1-202ENST00000368020 NCAPD2Q15021 1401 aa17.56■□□□□ 0.4
USF1-202ENST00000368020 N4BP2Q86UW6 1770 aaPredicted RBP17.56■□□□□ 0.4
USF1-202ENST00000368020 LTV1Q96GA3 475 aaPredicted RBP17.55■□□□□ 0.4
USF1-202ENST00000368020 NBPF6Q5VWK0 638 aa17.55■□□□□ 0.4
USF1-202ENST00000368020 NBPF4Q96M43 638 aa17.55■□□□□ 0.4
USF1-202ENST00000368020 STK31Q9BXU1 1019 aa17.55■□□□□ 0.4
USF1-202ENST00000368020 COL5A2P05997 1499 aaPredicted RBP17.54■□□□□ 0.4
USF1-202ENST00000368020 NUTM2BA6NNL0 878 aaPredicted RBP17.54■□□□□ 0.4
USF1-202ENST00000368020 NUTM2EB1AL46 878 aaPredicted RBP17.54■□□□□ 0.4
USF1-202ENST00000368020 NUTM2AQ8IVF1 878 aaPredicted RBP17.54■□□□□ 0.4
USF1-202ENST00000368020 RPAP2Q8IXW5 612 aaPredicted RBP17.54■□□□□ 0.4
USF1-202ENST00000368020 TBC1D32Q96NH3 1257 aa17.54■□□□□ 0.4
USF1-202ENST00000368020 WDR17Q8IZU2 1322 aa17.54■□□□□ 0.4
USF1-202ENST00000368020 ADAMTS2O95450 1211 aa17.53■□□□□ 0.4
USF1-202ENST00000368020 BMP2KLQ5H9B9 411 aa17.53■□□□□ 0.4
USF1-202ENST00000368020 CCDC30Q5VVM6 783 aa17.53■□□□□ 0.4
USF1-202ENST00000368020 CCT4P50991 539 aaKnown RBP17.52■□□□□ 0.4
USF1-202ENST00000368020 OVOS2A0A0G2JMS6 1433 aa17.52■□□□□ 0.39
USF1-202ENST00000368020 SLC4A2P04920 1241 aa17.52■□□□□ 0.39
USF1-202ENST00000368020 TAF7Q15545 349 aaPredicted RBP17.52■□□□□ 0.39
USF1-202ENST00000368020 BTG4Q9NY30 223 aa17.52■□□□□ 0.39
USF1-202ENST00000368020 PLEKHG2Q9H7P9 1386 aa17.51■□□□□ 0.39
USF1-202ENST00000368020 CSB-PGBD3P0DP91 1061 aa17.51■□□□□ 0.39
USF1-202ENST00000368020 RGPD2P0DJD1 1756 aa17.51■□□□□ 0.39
USF1-202ENST00000368020 NWD2Q9ULI1 1742 aa17.51■□□□□ 0.39
USF1-202ENST00000368020 SLIT2O94813 1529 aa17.51■□□□□ 0.39
USF1-202ENST00000368020 PXDNLA1KZ92 1463 aa17.51■□□□□ 0.39
USF1-202ENST00000368020 CEMIPQ8WUJ3 1361 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 EVA1CP58658 441 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 NLRP2Q9NX02 1062 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 NBR1Q14596 966 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 AMOTQ4VCS5 1084 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 ANKRD45Q5TZF3 282 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 ANKRD44Q8N8A2 993 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 LNPKQ9C0E8 428 aa17.5■□□□□ 0.39
USF1-202ENST00000368020 PLCH1Q4KWH8 1693 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 LRP6O75581 1613 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 KDM3BQ7LBC6 1761 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 HMMRO75330 724 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 SEC24BO95487 1268 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 HOXB7P09629 217 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 KRT24Q2M2I5 525 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 FNBP4Q8N3X1 1017 aaPredicted RBP17.49■□□□□ 0.39
USF1-202ENST00000368020 CARD10Q9BWT7 1032 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 DCTPP1Q9H773 170 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 ATP10DQ9P241 1426 aa17.49■□□□□ 0.39
USF1-202ENST00000368020 SIRT2Q8IXJ6 389 aa17.48■□□□□ 0.39
USF1-202ENST00000368020 TOM1L2Q6ZVM7 507 aa17.47■□□□□ 0.39
USF1-202ENST00000368020 C1orf115Q9H7X2 142 aa17.47■□□□□ 0.39
USF1-202ENST00000368020 PLEKHO1Q53GL0 409 aaPredicted RBP17.47■□□□□ 0.39
USF1-202ENST00000368020 LARP1Q6PKG0 1096 aaKnown RBP17.47■□□□□ 0.39
USF1-202ENST00000368020 NGLY1Q96IV0 654 aa17.47■□□□□ 0.39
USF1-202ENST00000368020 STRN4Q9NRL3 753 aa17.47■□□□□ 0.39
USF1-202ENST00000368020 USHBP1Q8N6Y0 703 aa17.46■□□□□ 0.39
USF1-202ENST00000368020 IL17REQ8NFR9 667 aa17.46■□□□□ 0.39
USF1-202ENST00000368020 MIS18AQ9NYP9 233 aa17.46■□□□□ 0.39
USF1-202ENST00000368020 NRAPQ86VF7 1730 aa17.45■□□□□ 0.38
USF1-202ENST00000368020 AKAP4Q5JQC9 854 aa17.45■□□□□ 0.38
USF1-202ENST00000368020 C22orf23Q9BZE7 217 aa17.45■□□□□ 0.38
USF1-202ENST00000368020 CEP85Q6P2H3 762 aa17.44■□□□□ 0.38
USF1-202ENST00000368020 UNC5CLQ8IV45 518 aa17.44■□□□□ 0.38
USF1-202ENST00000368020 C8orf37Q96NL8 207 aa17.44■□□□□ 0.38
USF1-202ENST00000368020 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.44■□□□□ 0.38
USF1-202ENST00000368020 GNAI3P08754 354 aa17.44■□□□□ 0.38
USF1-202ENST00000368020 RAPGEF4Q8WZA2 1011 aa17.44■□□□□ 0.38
USF1-202ENST00000368020 BCL9LQ86UU0 1499 aa17.44■□□□□ 0.38
USF1-202ENST00000368020 FLIIQ13045 1269 aa17.43■□□□□ 0.38
USF1-202ENST00000368020 MEX3CQ5U5Q3 659 aaKnown RBP17.43■□□□□ 0.38
USF1-202ENST00000368020 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.42■□□□□ 0.38
USF1-202ENST00000368020 MFAP1P55081 439 aaKnown RBP17.41■□□□□ 0.38
USF1-202ENST00000368020 C1orf141Q5JVX7 400 aa17.41■□□□□ 0.38
USF1-202ENST00000368020 POTEDQ86YR6 584 aa17.41■□□□□ 0.38
USF1-202ENST00000368020 THRAP3Q9Y2W1 955 aaKnown RBP17.41■□□□□ 0.38
USF1-202ENST00000368020 GNAI2P04899 355 aa17.41■□□□□ 0.38
USF1-202ENST00000368020 TATP17735 454 aaPredicted RBP17.41■□□□□ 0.38
USF1-202ENST00000368020 RBM25P49756 843 aaKnown RBP17.41■□□□□ 0.38
USF1-202ENST00000368020 FKBP5Q13451 457 aaPredicted RBP17.41■□□□□ 0.38
USF1-202ENST00000368020 ADAMTS7Q9UKP4 1686 aa17.4■□□□□ 0.38
USF1-202ENST00000368020 TEFQ10587 303 aa17.4■□□□□ 0.38
USF1-202ENST00000368020 VPS72Q15906 364 aa17.4■□□□□ 0.38
USF1-202ENST00000368020 ZNF530Q6P9A1 599 aaPredicted RBP17.4■□□□□ 0.38
USF1-202ENST00000368020 MEIS3Q99687 375 aa17.4■□□□□ 0.38
USF1-202ENST00000368020 SPATA31A1Q5TZJ5 1347 aa17.4■□□□□ 0.38
USF1-202ENST00000368020 SPATA31A5Q5VU36 1347 aa17.4■□□□□ 0.38
USF1-202ENST00000368020 SPATA31A7Q8IWB4 1347 aa17.4■□□□□ 0.38
USF1-202ENST00000368020 IL2RBP14784 551 aa17.39■□□□□ 0.37
USF1-202ENST00000368020 SLC4A3P48751 1232 aa17.39■□□□□ 0.37
USF1-202ENST00000368020 HDGFL1Q5TGJ6 251 aa17.39■□□□□ 0.37
USF1-202ENST00000368020 SLC4A10Q6U841 1118 aa17.39■□□□□ 0.37
USF1-202ENST00000368020 CDCA7Q9BWT1 371 aaPredicted RBP17.39■□□□□ 0.37
USF1-202ENST00000368020 USP21Q9UK80 565 aa17.39■□□□□ 0.37
USF1-202ENST00000368020 SIPA1L3O60292 1781 aaPredicted RBP17.39■□□□□ 0.37
USF1-202ENST00000368020 CDC45O75419 566 aa17.38■□□□□ 0.37
USF1-202ENST00000368020 MEGF6O75095 1541 aa17.38■□□□□ 0.37
USF1-202ENST00000368020 PARP4Q9UKK3 1724 aaKnown RBP17.38■□□□□ 0.37
USF1-202ENST00000368020 G2E3Q7L622 706 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms