RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 P4HBP07237 508 aaKnown RBP2.57□□□□□ -2
BRCA1-202ENST00000354071 TBCELQ5QJ74 424 aa2.57□□□□□ -2
BRCA1-202ENST00000354071 RSPH4AQ5TD94 716 aa2.57□□□□□ -2
BRCA1-202ENST00000354071 GLYCTKQ8IVS8 523 aa2.57□□□□□ -2
BRCA1-202ENST00000354071 PCDHGA11Q9Y5H2 935 aa2.57□□□□□ -2
BRCA1-202ENST00000354071 ATP5J2-PTCD1G3V325 749 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 PSME1Q06323 249 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 UBAP2LQ14157 1087 aaKnown RBP2.56□□□□□ -2
BRCA1-202ENST00000354071 GRIPAP1Q4V328 841 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 HINFPQ9BQA5 517 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 WWC3Q9ULE0 1092 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 ZC3H4Q9UPT8 1303 aaKnown RBP2.56□□□□□ -2
BRCA1-202ENST00000354071 BICRAQ9NZM4 1560 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 J3QL48 77 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 ICMTO60725 284 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 MYT1Q01538 1121 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 TAS1R3Q7RTX0 852 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 SERBP1Q8NC51 408 aaKnown RBP eCLIP2.56□□□□□ -2
BRCA1-202ENST00000354071 PNMA1Q8ND90 353 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 ADD1P35611 737 aaKnown RBP2.56□□□□□ -2
BRCA1-202ENST00000354071 EML3Q32P44 896 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 TNNI2P48788 182 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 HDLBPQ00341 1268 aaKnown RBP2.56□□□□□ -2
BRCA1-202ENST00000354071 B4GALNT3Q6L9W6 998 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 DOLKQ9UPQ8 538 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 TLL2Q9Y6L7 1015 aa2.56□□□□□ -2
BRCA1-202ENST00000354071 NAALADL2Q58DX5 795 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 GIMAP6Q6P9H5 292 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 ZNF662Q6ZS27 426 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 SIX5Q8N196 739 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 CCDC24Q8N4L8 307 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 ARHGAP9Q9BRR9 750 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 SWI5Q1ZZU3 235 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 TMC7Q7Z402 723 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 ATCAYQ86WG3 371 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 DNAJC2Q99543 621 aaKnown RBP2.55□□□□□ -2
BRCA1-202ENST00000354071 CCDC87Q9NVE4 849 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 MPSTP25325 297 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 SCNN1DP51172 638 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 HDGFP51858 240 aaKnown RBP2.55□□□□□ -2
BRCA1-202ENST00000354071 SEC13P55735 322 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 ERVK-9P63128 1117 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 RAD51AP2Q09MP3 1159 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 AAASQ9NRG9 546 aa2.55□□□□□ -2
BRCA1-202ENST00000354071 ZBTB39O15060 712 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 C21orf2O43822 256 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 TIMP2P16035 220 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 PUS7Q96PZ0 661 aaKnown RBP2.54□□□□□ -2
BRCA1-202ENST00000354071 PRKD2Q9BZL6 878 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 BAZ1AQ9NRL2 1556 aaPredicted RBP2.54□□□□□ -2
BRCA1-202ENST00000354071 SLC19A1P41440 591 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 HPS1Q92902 700 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 SENP3-EIF4A1A0A087X0R7 540 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 LAPTM4AQ15012 233 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 TRIM46Q7Z4K8 759 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 ZBTB33Q86T24 672 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 TNS4Q8IZW8 715 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 CHMP7Q8WUX9 453 aaPredicted RBP2.54□□□□□ -2
BRCA1-202ENST00000354071 GPKOWQ92917 476 aaPredicted RBP eCLIP2.54□□□□□ -2
BRCA1-202ENST00000354071 ASB16Q96NS5 453 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 IQSEC3Q9UPP2 1182 aaPredicted RBP2.54□□□□□ -2
BRCA1-202ENST00000354071 NOD1Q9Y239 953 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 PCDHB11Q9Y5F2 797 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 CDK11BP21127 795 aaKnown RBP2.54□□□□□ -2
BRCA1-202ENST00000354071 WEE1P30291 646 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 PTK2Q05397 1052 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 RC3H1Q5TC82 1133 aaKnown RBP2.54□□□□□ -2
BRCA1-202ENST00000354071 SH3PXD2AQ5TCZ1 1133 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 LARGE2Q8N3Y3 721 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 CDK11AQ9UQ88 783 aaPredicted RBP2.54□□□□□ -2
BRCA1-202ENST00000354071 USP3Q9Y6I4 520 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 LRP5O75197 1615 aa2.54□□□□□ -2
BRCA1-202ENST00000354071 GPR182O15218 404 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 ADH1CP00326 375 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 IGHA2P01877 340 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 HSP90B1P14625 803 aaKnown RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 ERCC5P28715 1186 aaPredicted RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 MRPL58Q14197 206 aaKnown RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 DZIP3Q86Y13 1208 aaKnown RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 SREK1Q8WXA9 508 aaKnown RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 TSPAN10Q9H1Z9 355 aaPredicted RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 DCTN4Q9UJW0 460 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 TMEM229AB2RXF0 380 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 MAPK8P45983 427 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 DHX38Q92620 1227 aaKnown RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 OSBPL3Q9H4L5 887 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 A0A1W2PRU2 124 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 WASLO00401 505 aaPredicted RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 METTL16Q86W50 562 aaKnown RBP2.53□□□□□ -2
BRCA1-202ENST00000354071 NT5DC4Q86YG4 428 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 CCDC125Q86Z20 511 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 C1orf216Q8TAB5 229 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 PCDHGB7Q9Y5F8 929 aa2.53□□□□□ -2
BRCA1-202ENST00000354071 PPM1GO15355 546 aaPredicted RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 FOXK2Q01167 660 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 FKBP4Q02790 459 aaKnown RBP eCLIP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 AGERQ15109 404 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 DRC1Q96MC2 740 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 CHMP4AQ9BY43 222 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 FHDC1Q9C0D6 1143 aaPredicted RBP2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms