RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 KCTD17Q8N5Z5 321 aa6.2□□□□□ -1.42
HMGB1-201ENST00000326004 CNKSR1Q969H4 720 aa6.2□□□□□ -1.42
HMGB1-201ENST00000326004 PATL2C9JE40 543 aaKnown RBP6.19□□□□□ -1.42
HMGB1-201ENST00000326004 IL2RAP01589 272 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 MTFR1Q15390 333 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 LINC00528Q8N1L1 170 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 CRIPAKQ8N1N5 446 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 TSEN2Q8NCE0 465 aaKnown RBP6.19□□□□□ -1.42
HMGB1-201ENST00000326004 AGBL1Q96MI9 1066 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 NLRP3Q96P20 1036 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 HINFPQ9BQA5 517 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 RAB6BQ9NRW1 208 aa6.19□□□□□ -1.42
HMGB1-201ENST00000326004 A6NJY4 79 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 SPINT1O43278 529 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 STAU1O95793 577 aaKnown RBP6.18□□□□□ -1.42
HMGB1-201ENST00000326004 GPC1P35052 558 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 SMTNP53814 917 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 TLR1Q15399 786 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 GAS2L2Q8NHY3 880 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 SERTAD1Q9UHV2 236 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 HRH3Q9Y5N1 445 aa6.18□□□□□ -1.42
HMGB1-201ENST00000326004 CARNS1A5YM72 827 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 MEN1O00255 615 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 AXIN1O15169 862 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 IGFBP4P22692 258 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 ATP2B4P23634 1241 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 EPHA4P54764 986 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 SCARF1Q14162 830 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 MRPL14Q6P1L8 145 aaKnown RBP6.17□□□□□ -1.42
HMGB1-201ENST00000326004 NBPF15Q8N660 670 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 C1orf216Q8TAB5 229 aa6.17□□□□□ -1.42
HMGB1-201ENST00000326004 ZNF395Q9H8N7 513 aaPredicted RBP6.17□□□□□ -1.42
HMGB1-201ENST00000326004 SCHIP1Q9P0W5 487 aaPredicted RBP6.17□□□□□ -1.42
HMGB1-201ENST00000326004 SSFA2P28290 1259 aa6.16□□□□□ -1.42
HMGB1-201ENST00000326004 GTF2E1P29083 439 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-201ENST00000326004 WEE1P30291 646 aa6.16□□□□□ -1.42
HMGB1-201ENST00000326004 RNF144AP50876 292 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-201ENST00000326004 FOXK2Q01167 660 aa6.16□□□□□ -1.42
HMGB1-201ENST00000326004 CENPCQ03188 943 aa6.16□□□□□ -1.42
HMGB1-201ENST00000326004 KCNA1Q09470 495 aa6.16□□□□□ -1.42
HMGB1-201ENST00000326004 TNS4Q8IZW8 715 aa6.16□□□□□ -1.42
HMGB1-201ENST00000326004 IRX2Q9BZI1 471 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-201ENST00000326004 FHDC1Q9C0D6 1143 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-201ENST00000326004 CXXC1Q9P0U4 656 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-201ENST00000326004 CDK2AP1O14519 115 aa6.15□□□□□ -1.42
HMGB1-201ENST00000326004 FOXO3O43524 673 aa6.15□□□□□ -1.42
HMGB1-201ENST00000326004 PRMT3O60678 531 aa6.15□□□□□ -1.42
HMGB1-201ENST00000326004 BMP2P12643 396 aa6.15□□□□□ -1.42
HMGB1-201ENST00000326004 OCLNQ16625 522 aa6.15□□□□□ -1.42
HMGB1-201ENST00000326004 ZSCAN10Q96SZ4 725 aaPredicted RBP6.15□□□□□ -1.42
HMGB1-201ENST00000326004 SLAIN2Q9P270 581 aa6.15□□□□□ -1.42
HMGB1-201ENST00000326004 CHMP3Q9Y3E7 222 aa6.15□□□□□ -1.42
HMGB1-201ENST00000326004 ATAD2Q6PL18 1390 aa6.15□□□□□ -1.43
HMGB1-201ENST00000326004 PSMA6P60900 246 aaKnown RBP6.14□□□□□ -1.43
HMGB1-201ENST00000326004 SLC27A3Q5K4L6 730 aa6.14□□□□□ -1.43
HMGB1-201ENST00000326004 PPARGC1BQ86YN6 1023 aaKnown RBP6.14□□□□□ -1.43
HMGB1-201ENST00000326004 SLC9A9Q8IVB4 645 aa6.14□□□□□ -1.43
HMGB1-201ENST00000326004 STAG2Q8N3U4 1231 aa6.14□□□□□ -1.43
HMGB1-201ENST00000326004 SCG3Q8WXD2 468 aaKnown RBP6.14□□□□□ -1.43
HMGB1-201ENST00000326004 PRIMPOLQ96LW4 560 aa6.14□□□□□ -1.43
HMGB1-201ENST00000326004 INSM2Q96T92 566 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-201ENST00000326004 GRIP2Q9C0E4 1043 aa6.14□□□□□ -1.43
HMGB1-201ENST00000326004 TSPAN10Q9H1Z9 355 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-201ENST00000326004 POLMQ9NP87 494 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-201ENST00000326004 IQSEC3Q9UPP2 1182 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-201ENST00000326004 ZBTB7CA1YPR0 619 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 PPP1R12BO60237 982 aaPredicted RBP6.13□□□□□ -1.43
HMGB1-201ENST00000326004 C6orf118Q5T5N4 469 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 FOXD4L5Q5VV16 416 aaPredicted RBP6.13□□□□□ -1.43
HMGB1-201ENST00000326004 PHLDB3Q6NSJ2 640 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 TMEM214Q6NUQ4 689 aaKnown RBP6.13□□□□□ -1.43
HMGB1-201ENST00000326004 TRIM46Q7Z4K8 759 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 AEBP1Q8IUX7 1158 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 RHBDD1Q8TEB9 315 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 COL26A1Q96A83 441 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 MTMR7Q9Y216 660 aa6.13□□□□□ -1.43
HMGB1-201ENST00000326004 TTLL8A6PVC2 850 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 SPATA31C2B4DYI2 1134 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 C21orf2O43822 256 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 BMP1P13497 986 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 ARID4AP29374 1257 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-201ENST00000326004 CTSOP43234 321 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-201ENST00000326004 GNASQ5JWF2 1037 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 TAS1R3Q7RTX0 852 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 RNF217Q8TC41 542 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 PURBQ96QR8 312 aaKnown RBP6.12□□□□□ -1.43
HMGB1-201ENST00000326004 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.12□□□□□ -1.439e-13■■■■■ 192.3
HMGB1-201ENST00000326004 AAASQ9NRG9 546 aa6.12□□□□□ -1.43
HMGB1-201ENST00000326004 GNEQ9Y223 722 aaKnown RBP6.12□□□□□ -1.43
HMGB1-201ENST00000326004 SOS2Q07890 1332 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-201ENST00000326004 PTCD1O75127 700 aaKnown RBP6.11□□□□□ -1.43
HMGB1-201ENST00000326004 LGR5O75473 907 aa6.11□□□□□ -1.43
HMGB1-201ENST00000326004 FKBP5Q13451 457 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-201ENST00000326004 TEAD4Q15561 434 aa6.11□□□□□ -1.43
HMGB1-201ENST00000326004 WDR44Q5JSH3 913 aa6.11□□□□□ -1.43
HMGB1-201ENST00000326004 POTEAQ6S8J7 498 aa6.11□□□□□ -1.43
HMGB1-201ENST00000326004 CCER1Q8TC90 406 aaPredicted RBP6.11□□□□□ -1.43
HMGB1-201ENST00000326004 VTI1AQ96AJ9 217 aa6.11□□□□□ -1.43
HMGB1-201ENST00000326004 ZFP42Q96MM3 310 aa6.11□□□□□ -1.43
HMGB1-201ENST00000326004 C2orf49Q9BVC5 232 aaPredicted RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms