Protein–RNA interactions for Protein: Q8BJ37

Tdp1, Tyrosyl-DNA phosphodiesterase 1, mousemouse

Predictions only

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tdp1Q8BJ37 Gm25239-201ENSMUST00000174915 86 ntBASIC43.8■■■■■ 4.6
Tdp1Q8BJ37 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.59■■■■■ 4.09
Tdp1Q8BJ37 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39.98■■■■□ 3.99
Tdp1Q8BJ37 Gm15042-201ENSMUST00000120212 883 ntBASIC38.1■■■■□ 3.69
Tdp1Q8BJ37 Gm24109-201ENSMUST00000175489 103 ntBASIC38.03■■■■□ 3.68
Tdp1Q8BJ37 Gm15045-201ENSMUST00000117359 883 ntBASIC37.26■■■■□ 3.56
Tdp1Q8BJ37 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
Tdp1Q8BJ37 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.98■■■■□ 3.51
Tdp1Q8BJ37 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
Tdp1Q8BJ37 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.78■■■■□ 3.48
Tdp1Q8BJ37 Gm23366-201ENSMUST00000175022 89 ntBASIC36.54■■■■□ 3.44
Tdp1Q8BJ37 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
Tdp1Q8BJ37 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.39
Tdp1Q8BJ37 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.63■■■■□ 3.29
Tdp1Q8BJ37 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
Tdp1Q8BJ37 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.54■■■■□ 3.28
Tdp1Q8BJ37 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.27■■■■□ 3.24
Tdp1Q8BJ37 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35.24■■■■□ 3.23
Tdp1Q8BJ37 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.14■■■■□ 3.22
Tdp1Q8BJ37 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
Tdp1Q8BJ37 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC35.01■■■■□ 3.19
Tdp1Q8BJ37 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
Tdp1Q8BJ37 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.93■■■■□ 3.18
Tdp1Q8BJ37 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
Tdp1Q8BJ37 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Tdp1Q8BJ37 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
Tdp1Q8BJ37 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
Tdp1Q8BJ37 Gm25238-201ENSMUST00000174914 89 ntBASIC34.65■■■■□ 3.14
Tdp1Q8BJ37 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.59■■■■□ 3.13
Tdp1Q8BJ37 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Tdp1Q8BJ37 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.11
Tdp1Q8BJ37 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34.5■■■■□ 3.11
Tdp1Q8BJ37 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34.25■■■■□ 3.07
Tdp1Q8BJ37 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
Tdp1Q8BJ37 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
Tdp1Q8BJ37 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.91■■■■□ 3.02
Tdp1Q8BJ37 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.85■■■■□ 3.01
Tdp1Q8BJ37 Psd-208ENSMUST00000224556 2034 ntBASIC33.75■■■□□ 2.99
Tdp1Q8BJ37 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
Tdp1Q8BJ37 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.67■■■□□ 2.98
Tdp1Q8BJ37 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33.66■■■□□ 2.98
Tdp1Q8BJ37 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.54■■■□□ 2.96
Tdp1Q8BJ37 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.53■■■□□ 2.96
Tdp1Q8BJ37 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.49■■■□□ 2.95
Tdp1Q8BJ37 Gm27325-201ENSMUST00000175467 74 ntBASIC33.38■■■□□ 2.93
Tdp1Q8BJ37 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.28■■■□□ 2.92
Tdp1Q8BJ37 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Tdp1Q8BJ37 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.22■■■□□ 2.91
Tdp1Q8BJ37 Gm25262-201ENSMUST00000174934 133 ntBASIC33.22■■■□□ 2.91
Tdp1Q8BJ37 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Tdp1Q8BJ37 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Tdp1Q8BJ37 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Tdp1Q8BJ37 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.89■■■□□ 2.86
Tdp1Q8BJ37 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Tdp1Q8BJ37 Rab21-202ENSMUST00000218831 843 ntBASIC32.86■■■□□ 2.85
Tdp1Q8BJ37 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.81■■■□□ 2.84
Tdp1Q8BJ37 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.78■■■□□ 2.84
Tdp1Q8BJ37 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.74■■■□□ 2.83
Tdp1Q8BJ37 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.69■■■□□ 2.82
Tdp1Q8BJ37 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
Tdp1Q8BJ37 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Tdp1Q8BJ37 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.61■■■□□ 2.81
Tdp1Q8BJ37 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.6■■■□□ 2.81
Tdp1Q8BJ37 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Tdp1Q8BJ37 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32.52■■■□□ 2.8
Tdp1Q8BJ37 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Tdp1Q8BJ37 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
Tdp1Q8BJ37 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.47■■■□□ 2.79
Tdp1Q8BJ37 Gm26115-201ENSMUST00000175605 87 ntBASIC32.46■■■□□ 2.79
Tdp1Q8BJ37 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Tdp1Q8BJ37 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.42■■■□□ 2.78
Tdp1Q8BJ37 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.37■■■□□ 2.77
Tdp1Q8BJ37 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Tdp1Q8BJ37 Gm8109-201ENSMUST00000194076 746 ntBASIC32.28■■■□□ 2.76
Tdp1Q8BJ37 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
Tdp1Q8BJ37 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
Tdp1Q8BJ37 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
Tdp1Q8BJ37 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
Tdp1Q8BJ37 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Tdp1Q8BJ37 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.16■■■□□ 2.74
Tdp1Q8BJ37 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.15■■■□□ 2.74
Tdp1Q8BJ37 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
Tdp1Q8BJ37 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Tdp1Q8BJ37 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32.08■■■□□ 2.73
Tdp1Q8BJ37 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Tdp1Q8BJ37 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC32■■■□□ 2.71
Tdp1Q8BJ37 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.97■■■□□ 2.71
Tdp1Q8BJ37 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Tdp1Q8BJ37 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Tdp1Q8BJ37 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
Tdp1Q8BJ37 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Tdp1Q8BJ37 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Tdp1Q8BJ37 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Tdp1Q8BJ37 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.8■■■□□ 2.68
Tdp1Q8BJ37 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.79■■■□□ 2.68
Tdp1Q8BJ37 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Tdp1Q8BJ37 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.75■■■□□ 2.67
Tdp1Q8BJ37 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.72■■■□□ 2.67
Tdp1Q8BJ37 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.71■■■□□ 2.67
Tdp1Q8BJ37 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms