Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gm25239-201ENSMUST00000174915 86 ntBASIC40.15■■■■■ 4.02
Rnf43Q5NCP0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37.24■■■■□ 3.55
Rnf43Q5NCP0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
Rnf43Q5NCP0 Gm24109-201ENSMUST00000175489 103 ntBASIC34.93■■■■□ 3.18
Rnf43Q5NCP0 Gm15042-201ENSMUST00000120212 883 ntBASIC34.84■■■■□ 3.17
Rnf43Q5NCP0 Gm15045-201ENSMUST00000117359 883 ntBASIC34.04■■■■□ 3.04
Rnf43Q5NCP0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.94■■■■□ 3.02
Rnf43Q5NCP0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Rnf43Q5NCP0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.81■■■■□ 3
Rnf43Q5NCP0 Gm23366-201ENSMUST00000175022 89 ntBASIC33.52■■■□□ 2.96
Rnf43Q5NCP0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
Rnf43Q5NCP0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Rnf43Q5NCP0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.63■■■□□ 2.81
Rnf43Q5NCP0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Rnf43Q5NCP0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
Rnf43Q5NCP0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.35■■■□□ 2.77
Rnf43Q5NCP0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.33■■■□□ 2.77
Rnf43Q5NCP0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Rnf43Q5NCP0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.25■■■□□ 2.75
Rnf43Q5NCP0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Rnf43Q5NCP0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Rnf43Q5NCP0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Rnf43Q5NCP0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.83■■■□□ 2.69
Rnf43Q5NCP0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
Rnf43Q5NCP0 Gm25238-201ENSMUST00000174914 89 ntBASIC31.78■■■□□ 2.68
Rnf43Q5NCP0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Rnf43Q5NCP0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Rnf43Q5NCP0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.51■■■□□ 2.63
Rnf43Q5NCP0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Rnf43Q5NCP0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Rnf43Q5NCP0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.23■■■□□ 2.59
Rnf43Q5NCP0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
Rnf43Q5NCP0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Rnf43Q5NCP0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.03■■■□□ 2.56
Rnf43Q5NCP0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Rnf43Q5NCP0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
Rnf43Q5NCP0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.85■■■□□ 2.53
Rnf43Q5NCP0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.84■■■□□ 2.53
Rnf43Q5NCP0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Rnf43Q5NCP0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Rnf43Q5NCP0 Gm25262-201ENSMUST00000174934 133 ntBASIC30.59■■■□□ 2.49
Rnf43Q5NCP0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.5■■■□□ 2.47
Rnf43Q5NCP0 Gm27325-201ENSMUST00000175467 74 ntBASIC30.5■■■□□ 2.47
Rnf43Q5NCP0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Rnf43Q5NCP0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Rnf43Q5NCP0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.29■■■□□ 2.44
Rnf43Q5NCP0 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.23■■■□□ 2.43
Rnf43Q5NCP0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Rnf43Q5NCP0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Rnf43Q5NCP0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Rnf43Q5NCP0 Rab21-202ENSMUST00000218831 843 ntBASIC30.13■■■□□ 2.41
Rnf43Q5NCP0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.07■■■□□ 2.4
Rnf43Q5NCP0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.02■■■□□ 2.4
Rnf43Q5NCP0 Psd-208ENSMUST00000224556 2034 ntBASIC30.01■■■□□ 2.4
Rnf43Q5NCP0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
Rnf43Q5NCP0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Rnf43Q5NCP0 Gm26115-201ENSMUST00000175605 87 ntBASIC29.94■■■□□ 2.38
Rnf43Q5NCP0 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
Rnf43Q5NCP0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.82■■■□□ 2.36
Rnf43Q5NCP0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
Rnf43Q5NCP0 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Rnf43Q5NCP0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.76■■■□□ 2.35
Rnf43Q5NCP0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
Rnf43Q5NCP0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Rnf43Q5NCP0 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
Rnf43Q5NCP0 Gm8109-201ENSMUST00000194076 746 ntBASIC29.7■■■□□ 2.35
Rnf43Q5NCP0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.69■■■□□ 2.34
Rnf43Q5NCP0 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC29.69■■■□□ 2.34
Rnf43Q5NCP0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Rnf43Q5NCP0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Rnf43Q5NCP0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.5■■■□□ 2.31
Rnf43Q5NCP0 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29.48■■■□□ 2.31
Rnf43Q5NCP0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.48■■■□□ 2.31
Rnf43Q5NCP0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
Rnf43Q5NCP0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Rnf43Q5NCP0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Rnf43Q5NCP0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.37■■■□□ 2.29
Rnf43Q5NCP0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Rnf43Q5NCP0 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Rnf43Q5NCP0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Rnf43Q5NCP0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
Rnf43Q5NCP0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
Rnf43Q5NCP0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
Rnf43Q5NCP0 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Rnf43Q5NCP0 Gm17082-201ENSMUST00000166043 1091 ntBASIC29.12■■■□□ 2.25
Rnf43Q5NCP0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.12■■■□□ 2.25
Rnf43Q5NCP0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
Rnf43Q5NCP0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
Rnf43Q5NCP0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Rnf43Q5NCP0 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.99■■■□□ 2.23
Rnf43Q5NCP0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Rnf43Q5NCP0 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC28.94■■■□□ 2.22
Rnf43Q5NCP0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC28.93■■■□□ 2.22
Rnf43Q5NCP0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.92■■■□□ 2.22
Rnf43Q5NCP0 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Rnf43Q5NCP0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Rnf43Q5NCP0 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Rnf43Q5NCP0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Rnf43Q5NCP0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
Rnf43Q5NCP0 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms