Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 YJL150WYJL150W 303 nt0.32□□□□□ -2.36
SSM4P40318 snR48snR48 113 nt0.32□□□□□ -2.36
SSM4P40318 YOL013W-AYOL013W-A 192 nt0.31□□□□□ -2.36
SSM4P40318 CSE1YGL238W 2883 nt0.29□□□□□ -2.36
SSM4P40318 YBR099CYBR099C 384 nt0.27□□□□□ -2.37
SSM4P40318 YDR210WYDR210W 228 nt0.24□□□□□ -2.37
SSM4P40318 tM(CAU)Q2tM(CAU)Q2 78 nt0.24□□□□□ -2.37
SSM4P40318 YOR329W-AYOR329W-A 210 nt0.23□□□□□ -2.37
SSM4P40318 SOV1YMR066W 2697 nt0.22□□□□□ -2.37
SSM4P40318 snR39BsnR39B 96 nt0.18□□□□□ -2.38
SSM4P40318 snR45snR45 172 nt0.18□□□□□ -2.38
SSM4P40318 tL(UAA)QtL(UAA)Q 85 nt0.17□□□□□ -2.38
SSM4P40318 YGR146C-AYGR146C-A 162 nt0.17□□□□□ -2.38
SSM4P40318 YOR102WYOR102W 351 nt0.16□□□□□ -2.38
SSM4P40318 YDL007C-AYDL007C-A 258 nt0.15□□□□□ -2.38
SSM4P40318 YHL015W-AYHL015W-A 84 nt0.15□□□□□ -2.38
SSM4P40318 EST1YLR233C 2100 nt0.13□□□□□ -2.39
SSM4P40318 YLR466C-BYLR466C-B 117 nt0.08□□□□□ -2.4
SSM4P40318 YNL198CYNL198C 303 nt0.08□□□□□ -2.4
SSM4P40318 YJL077W-AYJL077W-A 87 nt0.07□□□□□ -2.4
SSM4P40318 YNL337WYNL337W 255 nt0.06□□□□□ -2.4
SSM4P40318 YNL067W-BYNL067W-B 141 nt0.05□□□□□ -2.4
SSM4P40318 YGR151CYGR151C 336 nt0.02□□□□□ -2.41
SSM4P40318 snR69snR69 101 nt0□□□□□ -2.41
SSM4P40318 YBL053WYBL053W 375 nt-0.01□□□□□ -2.41
SSM4P40318 TFB5YDR079C-A 219 nt-0.02□□□□□ -2.41
SSM4P40318 PMP2YEL017C-A 132 nt-0.02□□□□□ -2.41
SSM4P40318 YNL205CYNL205C 423 nt-0.02□□□□□ -2.41
SSM4P40318 snR128snR128 126 nt-0.04□□□□□ -2.42
SSM4P40318 YGR164WYGR164W 336 nt-0.05□□□□□ -2.42
SSM4P40318 Q0032Q0032 291 nt-0.07□□□□□ -2.42
SSM4P40318 RDS3YPR094W 324 nt-0.11□□□□□ -2.43
SSM4P40318 YGL007C-AYGL007C-A 87 nt-0.12□□□□□ -2.43
SSM4P40318 SEC10YLR166C 2616 nt-0.13□□□□□ -2.43
SSM4P40318 tQ(UUG)QtQ(UUG)Q 76 nt-0.13□□□□□ -2.43
SSM4P40318 YNL338WYNL338W 159 nt-0.13□□□□□ -2.43
SSM4P40318 tD(GUC)QtD(GUC)Q 75 nt-0.17□□□□□ -2.44
SSM4P40318 YML100W-AYML100W-A 174 nt-0.2□□□□□ -2.44
SSM4P40318 YER090C-AYER090C-A 90 nt-0.21□□□□□ -2.44
SSM4P40318 SBH2YER019C-A 267 nt-0.22□□□□□ -2.44
SSM4P40318 SOM1YEL059C-A 225 nt-0.23□□□□□ -2.45
SSM4P40318 YCR095W-AYCR095W-A 159 nt-0.24□□□□□ -2.45
SSM4P40318 YNL266WYNL266W 420 nt-0.25□□□□□ -2.45
SSM4P40318 YBR178WYBR178W 375 nt-0.27□□□□□ -2.45
SSM4P40318 YLR286W-AYLR286W-A 135 nt-0.29□□□□□ -2.46
SSM4P40318 URB1YKL014C 5295 nt-0.29□□□□□ -2.46
SSM4P40318 YOR225WYOR225W 330 nt-0.31□□□□□ -2.46
SSM4P40318 snR50snR50 90 nt-0.31□□□□□ -2.46
SSM4P40318 YDL159C-BYDL159C-B 177 nt-0.33□□□□□ -2.46
SSM4P40318 YIL071W-AYIL071W-A 477 nt-0.33□□□□□ -2.46
SSM4P40318 YBR196C-AYBR196C-A 150 nt-0.33□□□□□ -2.46
SSM4P40318 PAU9YBL108C-A 129 nt-0.36□□□□□ -2.47
SSM4P40318 tA(UGC)QtA(UGC)Q 76 nt-0.38□□□□□ -2.47
SSM4P40318 YNR077CYNR077C 255 nt-0.41□□□□□ -2.48
SSM4P40318 YCL001W-BYCL001W-B 255 nt-0.42□□□□□ -2.48
SSM4P40318 YLR294CYLR294C 330 nt-0.44□□□□□ -2.48
SSM4P40318 YLR299C-AYLR299C-A 93 nt-0.44□□□□□ -2.48
SSM4P40318 snR67snR67 82 nt-0.47□□□□□ -2.48
SSM4P40318 YHL009W-BYHL009W-B 5409 nt-0.51□□□□□ -2.49
SSM4P40318 SKI7YOR076C 2244 nt-0.54□□□□□ -2.5
SSM4P40318 snR33snR33 183 nt-0.57□□□□□ -2.5
SSM4P40318 snR161snR161 161 nt-0.63□□□□□ -2.51
SSM4P40318 YML054C-AYML054C-A 159 nt-0.67□□□□□ -2.52
SSM4P40318 tT(UGU)G1tT(UGU)G1 72 nt-0.69□□□□□ -2.52
SSM4P40318 tT(UGU)G2tT(UGU)G2 72 nt-0.69□□□□□ -2.52
SSM4P40318 tT(UGU)PtT(UGU)P 72 nt-0.69□□□□□ -2.52
SSM4P40318 YHR180C-BYHR180C-B 105 nt-0.73□□□□□ -2.53
SSM4P40318 YAL037C-AYAL037C-A 93 nt-0.77□□□□□ -2.53
SSM4P40318 YNL170WYNL170W 396 nt-0.77□□□□□ -2.53
SSM4P40318 tP(UGG)QtP(UGG)Q 72 nt-0.78□□□□□ -2.53
SSM4P40318 YBL071C-BYBL071C-B 99 nt-0.8□□□□□ -2.54
SSM4P40318 YOL083C-AYOL083C-A 141 nt-0.8□□□□□ -2.54
SSM4P40318 YOR376W-AYOR376W-A 156 nt-0.81□□□□□ -2.54
SSM4P40318 YBR223W-AYBR223W-A 120 nt-0.81□□□□□ -2.54
SSM4P40318 snR77snR77 88 nt-0.84□□□□□ -2.54
SSM4P40318 ATP8Q0080 147 nt-0.86□□□□□ -2.55
SSM4P40318 snR81snR81 201 nt-0.87□□□□□ -2.55
SSM4P40318 YBR109W-AYBR109W-A 225 nt-0.87□□□□□ -2.55
SSM4P40318 YOL164W-AYOL164W-A 183 nt-0.89□□□□□ -2.55
SSM4P40318 CDC65tQ(CUG)M 72 nt-0.9□□□□□ -2.55
SSM4P40318 RPL41AYDL184C 78 nt-0.91□□□□□ -2.56
SSM4P40318 snR38snR38 95 nt-0.91□□□□□ -2.56
SSM4P40318 YKL106C-AYKL106C-A 120 nt-0.93□□□□□ -2.56
SSM4P40318 YBR296C-AYBR296C-A 120 nt-0.93□□□□□ -2.56
SSM4P40318 YGR240C-AYGR240C-A 201 nt-0.96□□□□□ -2.56
SSM4P40318 snR47snR47 99 nt-0.96□□□□□ -2.56
SSM4P40318 YOR316C-AYOR316C-A 210 nt-0.97□□□□□ -2.57
SSM4P40318 snR61snR61 90 nt-0.99□□□□□ -2.57
SSM4P40318 YNL103W-AYNL103W-A 90 nt-1□□□□□ -2.57
SSM4P40318 YBL100W-CYBL100W-C 120 nt-1.02□□□□□ -2.57
SSM4P40318 YMR315W-AYMR315W-A 108 nt-1.03□□□□□ -2.57
SSM4P40318 YGL041C-BYGL041C-B 183 nt-1.06□□□□□ -2.58
SSM4P40318 tS(GCU)Q1tS(GCU)Q1 86 nt-1.07□□□□□ -2.58
SSM4P40318 Q0092Q0092 141 nt-1.11□□□□□ -2.59
SSM4P40318 tY(GUA)QtY(GUA)Q 84 nt-1.12□□□□□ -2.59
SSM4P40318 YKL225WYKL225W 348 nt-1.15□□□□□ -2.59
SSM4P40318 YOR309CYOR309C 381 nt-1.21□□□□□ -2.6
SSM4P40318 YDR034C-AYDR034C-A 177 nt-1.24□□□□□ -2.61
SSM4P40318 snR6snR6 112 nt-1.28□□□□□ -2.61
SSM4P40318 Q0143Q0143 153 nt-1.3□□□□□ -2.62
Retrieved 100 of 7,029 protein–RNA pairs in 15.6 ms