Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Gm25239-201ENSMUST00000174915 86 ntBASIC42.16■■■■■ 4.34
Cxcl12P40224 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.23■■■■□ 3.87
Cxcl12P40224 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
Cxcl12P40224 Gm24109-201ENSMUST00000175489 103 ntBASIC36.81■■■■□ 3.48
Cxcl12P40224 Gm15042-201ENSMUST00000120212 883 ntBASIC36.32■■■■□ 3.4
Cxcl12P40224 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.73■■■■□ 3.31
Cxcl12P40224 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.63■■■■□ 3.29
Cxcl12P40224 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
Cxcl12P40224 Gm15045-201ENSMUST00000117359 883 ntBASIC35.37■■■■□ 3.25
Cxcl12P40224 Gm23366-201ENSMUST00000175022 89 ntBASIC35.17■■■■□ 3.22
Cxcl12P40224 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
Cxcl12P40224 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.52■■■■□ 3.12
Cxcl12P40224 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.24■■■■□ 3.07
Cxcl12P40224 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
Cxcl12P40224 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.11■■■■□ 3.05
Cxcl12P40224 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
Cxcl12P40224 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
Cxcl12P40224 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.7■■■□□ 2.98
Cxcl12P40224 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
Cxcl12P40224 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.56■■■□□ 2.96
Cxcl12P40224 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
Cxcl12P40224 Gm25238-201ENSMUST00000174914 89 ntBASIC33.43■■■□□ 2.94
Cxcl12P40224 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
Cxcl12P40224 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Cxcl12P40224 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.81■■■□□ 2.84
Cxcl12P40224 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.79■■■□□ 2.84
Cxcl12P40224 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
Cxcl12P40224 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
Cxcl12P40224 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Cxcl12P40224 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Cxcl12P40224 Gm25262-201ENSMUST00000174934 133 ntBASIC32.37■■■□□ 2.77
Cxcl12P40224 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.35■■■□□ 2.77
Cxcl12P40224 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.29■■■□□ 2.76
Cxcl12P40224 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.29■■■□□ 2.76
Cxcl12P40224 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
Cxcl12P40224 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.13■■■□□ 2.73
Cxcl12P40224 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Cxcl12P40224 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.01■■■□□ 2.71
Cxcl12P40224 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.01■■■□□ 2.71
Cxcl12P40224 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Cxcl12P40224 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.9■■■□□ 2.7
Cxcl12P40224 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.83■■■□□ 2.69
Cxcl12P40224 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.8■■■□□ 2.68
Cxcl12P40224 Gm26115-201ENSMUST00000175605 87 ntBASIC31.79■■■□□ 2.68
Cxcl12P40224 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.79■■■□□ 2.68
Cxcl12P40224 Gm27325-201ENSMUST00000175467 74 ntBASIC31.72■■■□□ 2.67
Cxcl12P40224 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Cxcl12P40224 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
Cxcl12P40224 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Cxcl12P40224 Rab21-202ENSMUST00000218831 843 ntBASIC31.53■■■□□ 2.64
Cxcl12P40224 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.52■■■□□ 2.64
Cxcl12P40224 Gm8109-201ENSMUST00000194076 746 ntBASIC31.5■■■□□ 2.63
Cxcl12P40224 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Cxcl12P40224 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Cxcl12P40224 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Cxcl12P40224 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Cxcl12P40224 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Cxcl12P40224 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Cxcl12P40224 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cxcl12P40224 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
Cxcl12P40224 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
Cxcl12P40224 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.02■■■□□ 2.56
Cxcl12P40224 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31■■■□□ 2.55
Cxcl12P40224 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.98■■■□□ 2.55
Cxcl12P40224 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.92■■■□□ 2.54
Cxcl12P40224 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Cxcl12P40224 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
Cxcl12P40224 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
Cxcl12P40224 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.72■■■□□ 2.51
Cxcl12P40224 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Cxcl12P40224 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.59■■■□□ 2.49
Cxcl12P40224 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Cxcl12P40224 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cxcl12P40224 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cxcl12P40224 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Cxcl12P40224 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.49■■■□□ 2.47
Cxcl12P40224 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Cxcl12P40224 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cxcl12P40224 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.44■■■□□ 2.46
Cxcl12P40224 Gm24804-201ENSMUST00000174982 85 ntBASIC30.41■■■□□ 2.46
Cxcl12P40224 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
Cxcl12P40224 Gm27322-201ENSMUST00000184007 104 ntBASIC30.25■■■□□ 2.43
Cxcl12P40224 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.24■■■□□ 2.43
Cxcl12P40224 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.24■■■□□ 2.43
Cxcl12P40224 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Cxcl12P40224 Psd-208ENSMUST00000224556 2034 ntBASIC30.23■■■□□ 2.43
Cxcl12P40224 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.23■■■□□ 2.43
Cxcl12P40224 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.15■■■□□ 2.42
Cxcl12P40224 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
Cxcl12P40224 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.09■■■□□ 2.41
Cxcl12P40224 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
Cxcl12P40224 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.06■■■□□ 2.4
Cxcl12P40224 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30■■■□□ 2.39
Cxcl12P40224 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC29.98■■■□□ 2.39
Cxcl12P40224 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Cxcl12P40224 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Cxcl12P40224 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.9■■■□□ 2.38
Cxcl12P40224 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Cxcl12P40224 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
Cxcl12P40224 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
Retrieved 100 of 76,532 protein–RNA pairs in 8.8 ms