Protein–RNA interactions for Protein: P23440

Pde6b, Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta, mousemouse

Predictions only

Length 856 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pde6bP23440 Gm25239-201ENSMUST00000174915 86 ntBASIC42.04■■■■■ 4.32
Pde6bP23440 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.94■■■■□ 3.82
Pde6bP23440 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
Pde6bP23440 Gm15042-201ENSMUST00000120212 883 ntBASIC36.62■■■■□ 3.45
Pde6bP23440 Gm24109-201ENSMUST00000175489 103 ntBASIC36.46■■■■□ 3.43
Pde6bP23440 Gm15045-201ENSMUST00000117359 883 ntBASIC35.74■■■■□ 3.31
Pde6bP23440 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
Pde6bP23440 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.51■■■■□ 3.28
Pde6bP23440 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
Pde6bP23440 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
Pde6bP23440 Gm23366-201ENSMUST00000175022 89 ntBASIC35.14■■■■□ 3.22
Pde6bP23440 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Pde6bP23440 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
Pde6bP23440 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
Pde6bP23440 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34.16■■■■□ 3.06
Pde6bP23440 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.09■■■■□ 3.05
Pde6bP23440 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.88■■■■□ 3.01
Pde6bP23440 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.79■■■■□ 3
Pde6bP23440 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.76■■■□□ 2.99
Pde6bP23440 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.6■■■□□ 2.97
Pde6bP23440 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
Pde6bP23440 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Pde6bP23440 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.49■■■□□ 2.95
Pde6bP23440 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
Pde6bP23440 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
Pde6bP23440 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Pde6bP23440 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Pde6bP23440 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.28■■■□□ 2.92
Pde6bP23440 Gm25238-201ENSMUST00000174914 89 ntBASIC33.22■■■□□ 2.91
Pde6bP23440 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Pde6bP23440 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.07■■■□□ 2.89
Pde6bP23440 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
Pde6bP23440 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.84■■■□□ 2.85
Pde6bP23440 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Pde6bP23440 Psd-208ENSMUST00000224556 2034 ntBASIC32.69■■■□□ 2.82
Pde6bP23440 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
Pde6bP23440 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.6■■■□□ 2.81
Pde6bP23440 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.45■■■□□ 2.79
Pde6bP23440 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Pde6bP23440 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Pde6bP23440 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.35■■■□□ 2.77
Pde6bP23440 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.24■■■□□ 2.75
Pde6bP23440 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.22■■■□□ 2.75
Pde6bP23440 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.2■■■□□ 2.75
Pde6bP23440 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Pde6bP23440 Gm27325-201ENSMUST00000175467 74 ntBASIC32.07■■■□□ 2.72
Pde6bP23440 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.01■■■□□ 2.71
Pde6bP23440 Gm25262-201ENSMUST00000174934 133 ntBASIC31.95■■■□□ 2.71
Pde6bP23440 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Pde6bP23440 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Pde6bP23440 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Pde6bP23440 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Pde6bP23440 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.62■■■□□ 2.65
Pde6bP23440 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Pde6bP23440 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Pde6bP23440 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Pde6bP23440 Rab21-202ENSMUST00000218831 843 ntBASIC31.59■■■□□ 2.65
Pde6bP23440 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.52■■■□□ 2.64
Pde6bP23440 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.52■■■□□ 2.64
Pde6bP23440 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.45■■■□□ 2.63
Pde6bP23440 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
Pde6bP23440 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Pde6bP23440 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.34■■■□□ 2.61
Pde6bP23440 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.33■■■□□ 2.61
Pde6bP23440 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
Pde6bP23440 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
Pde6bP23440 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Pde6bP23440 Gm26115-201ENSMUST00000175605 87 ntBASIC31.21■■■□□ 2.59
Pde6bP23440 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Pde6bP23440 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Pde6bP23440 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.11■■■□□ 2.57
Pde6bP23440 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.09■■■□□ 2.57
Pde6bP23440 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.08■■■□□ 2.57
Pde6bP23440 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Pde6bP23440 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Pde6bP23440 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Pde6bP23440 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.55
Pde6bP23440 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Pde6bP23440 Gm8109-201ENSMUST00000194076 746 ntBASIC30.98■■■□□ 2.55
Pde6bP23440 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.92■■■□□ 2.54
Pde6bP23440 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Pde6bP23440 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Pde6bP23440 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
Pde6bP23440 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Pde6bP23440 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.85■■■□□ 2.53
Pde6bP23440 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
Pde6bP23440 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Pde6bP23440 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
Pde6bP23440 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Pde6bP23440 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Pde6bP23440 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.66■■■□□ 2.5
Pde6bP23440 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Pde6bP23440 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Pde6bP23440 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Pde6bP23440 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.59■■■□□ 2.49
Pde6bP23440 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.53■■■□□ 2.48
Pde6bP23440 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Pde6bP23440 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Pde6bP23440 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
Pde6bP23440 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.46■■■□□ 2.47
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms