Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC15.84■□□□□ 0.13
Ubr4A2AN08 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ubr4A2AN08 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ubr4A2AN08 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ubr4A2AN08 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ubr4A2AN08 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC15.81■□□□□ 0.12
Ubr4A2AN08 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ubr4A2AN08 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC15.78■□□□□ 0.12
Ubr4A2AN08 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ubr4A2AN08 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ubr4A2AN08 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ubr4A2AN08 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC15.73■□□□□ 0.11
Ubr4A2AN08 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ubr4A2AN08 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ubr4A2AN08 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Ubr4A2AN08 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC15.66■□□□□ 0.1
Ubr4A2AN08 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC15.6■□□□□ 0.09
Ubr4A2AN08 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Ubr4A2AN08 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Ubr4A2AN08 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Ubr4A2AN08 Tdp2-203ENSMUST00000223804 1136 ntBASIC15.57■□□□□ 0.08
Ubr4A2AN08 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Ubr4A2AN08 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ubr4A2AN08 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ubr4A2AN08 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC15.56■□□□□ 0.08
Ubr4A2AN08 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC15.56■□□□□ 0.08
Ubr4A2AN08 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ubr4A2AN08 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC15.56■□□□□ 0.08
Ubr4A2AN08 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ubr4A2AN08 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Ubr4A2AN08 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Ubr4A2AN08 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ubr4A2AN08 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ubr4A2AN08 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ubr4A2AN08 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC15.48■□□□□ 0.07
Ubr4A2AN08 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Ubr4A2AN08 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ubr4A2AN08 Gm45855-201ENSMUST00000212546 880 ntBASIC15.47■□□□□ 0.07
Ubr4A2AN08 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
Ubr4A2AN08 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC15.47■□□□□ 0.07
Ubr4A2AN08 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Ubr4A2AN08 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Ubr4A2AN08 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Ubr4A2AN08 Gm16148-201ENSMUST00000119653 893 ntBASIC15.42■□□□□ 0.06
Ubr4A2AN08 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Ubr4A2AN08 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ubr4A2AN08 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ubr4A2AN08 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ubr4A2AN08 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Ubr4A2AN08 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ubr4A2AN08 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ubr4A2AN08 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
Ubr4A2AN08 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Ubr4A2AN08 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ubr4A2AN08 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Ubr4A2AN08 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ubr4A2AN08 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
Ubr4A2AN08 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubr4A2AN08 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ubr4A2AN08 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ubr4A2AN08 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC15.29■□□□□ 0.04
Ubr4A2AN08 AC166822.3-201ENSMUST00000227394 661 ntBASIC15.29■□□□□ 0.04
Ubr4A2AN08 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ubr4A2AN08 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Ubr4A2AN08 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ubr4A2AN08 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC15.25■□□□□ 0.03
Ubr4A2AN08 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC15.25■□□□□ 0.03
Ubr4A2AN08 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ubr4A2AN08 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ubr4A2AN08 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ubr4A2AN08 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC15.23■□□□□ 0.03
Ubr4A2AN08 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ubr4A2AN08 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Ubr4A2AN08 Gm9397-201ENSMUST00000200125 605 ntBASIC15.16■□□□□ 0.02
Ubr4A2AN08 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ubr4A2AN08 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ubr4A2AN08 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubr4A2AN08 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Ubr4A2AN08 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC15.13■□□□□ 0.01
Ubr4A2AN08 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubr4A2AN08 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC15.12■□□□□ 0.01
Ubr4A2AN08 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC15.12■□□□□ 0.01
Ubr4A2AN08 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubr4A2AN08 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ubr4A2AN08 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC15.08■□□□□ 0.01
Ubr4A2AN08 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC15.07■□□□□ 0
Ubr4A2AN08 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Ubr4A2AN08 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ubr4A2AN08 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ubr4A2AN08 Gm8503-201ENSMUST00000118131 455 ntBASIC15.06■□□□□ 0
Ubr4A2AN08 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC15.05■□□□□ -0
Ubr4A2AN08 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ubr4A2AN08 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ubr4A2AN08 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ubr4A2AN08 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ubr4A2AN08 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ubr4A2AN08 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ubr4A2AN08 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC15.02■□□□□ -0
Ubr4A2AN08 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Ubr4A2AN08 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms