Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-345P-201ENST00000517001 107 ntBASIC-2.42□□□□□ -2.8
DDX28Q9NUL7 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.44□□□□□ -2.8
DDX28Q9NUL7 RNU6-776P-201ENST00000364403 104 ntBASIC-2.46□□□□□ -2.8
DDX28Q9NUL7 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.46□□□□□ -2.8
DDX28Q9NUL7 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.46□□□□□ -2.8
DDX28Q9NUL7 RNU6-822P-201ENST00000362707 106 ntBASIC-2.48□□□□□ -2.81
DDX28Q9NUL7 SNORD113-4-201ENST00000364802 75 ntBASIC-2.48□□□□□ -2.81
DDX28Q9NUL7 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.48□□□□□ -2.81
DDX28Q9NUL7 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.49□□□□□ -2.81
DDX28Q9NUL7 RNU6-1255P-201ENST00000363434 112 ntBASIC-2.49□□□□□ -2.81
DDX28Q9NUL7 RNU6-471P-201ENST00000383944 106 ntBASIC-2.49□□□□□ -2.81
DDX28Q9NUL7 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.51□□□□□ -2.81
DDX28Q9NUL7 AC139453.2-201ENST00000487255 133 ntBASIC-2.51□□□□□ -2.81
DDX28Q9NUL7 MIR4662A-201ENST00000637499 67 ntBASIC-2.51□□□□□ -2.81
DDX28Q9NUL7 AL731768.1-201ENST00000603124 139 ntBASIC-2.53□□□□□ -2.81
DDX28Q9NUL7 MIR4317-201ENST00000637586 65 ntBASIC-2.53□□□□□ -2.81
DDX28Q9NUL7 MIR548H4-201ENST00000408689 111 ntBASIC-2.54□□□□□ -2.82
DDX28Q9NUL7 RNU6-230P-201ENST00000362457 104 ntBASIC-2.55□□□□□ -2.82
DDX28Q9NUL7 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.56□□□□□ -2.82
DDX28Q9NUL7 MIR1302-4-201ENST00000408701 150 ntBASIC-2.56□□□□□ -2.82
DDX28Q9NUL7 AC114801.3-201ENST00000510231 177 ntBASIC-2.56□□□□□ -2.82
DDX28Q9NUL7 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.57□□□□□ -2.82
DDX28Q9NUL7 MIR633-201ENST00000384821 98 ntBASIC-2.58□□□□□ -2.82
DDX28Q9NUL7 SNORD115.2-201ENST00000391126 59 ntBASIC-2.58□□□□□ -2.82
DDX28Q9NUL7 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.59□□□□□ -2.82
DDX28Q9NUL7 RNU4-33P-201ENST00000364316 85 ntBASIC-2.59□□□□□ -2.82
DDX28Q9NUL7 RNU6-829P-201ENST00000363700 112 ntBASIC-2.6□□□□□ -2.83
DDX28Q9NUL7 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.6□□□□□ -2.83
DDX28Q9NUL7 RNA5SP224-201ENST00000365069 126 ntBASIC-2.6□□□□□ -2.83
DDX28Q9NUL7 RNU6-1008P-201ENST00000384160 104 ntBASIC-2.6□□□□□ -2.83
DDX28Q9NUL7 MIR548AL-201ENST00000578416 97 ntBASIC-2.6□□□□□ -2.83
DDX28Q9NUL7 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.61□□□□□ -2.83
DDX28Q9NUL7 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.62□□□□□ -2.83
DDX28Q9NUL7 MIR5693-201ENST00000577722 73 ntBASIC-2.62□□□□□ -2.83
DDX28Q9NUL7 SNORD45C-201ENST00000383893 79 ntBASIC-2.64□□□□□ -2.83
DDX28Q9NUL7 RNY4P25-201ENST00000459254 96 ntBASIC-2.64□□□□□ -2.83
DDX28Q9NUL7 RNU6-737P-201ENST00000365370 107 ntBASIC-2.65□□□□□ -2.83
DDX28Q9NUL7 MIR656-201ENST00000385224 78 ntBASIC-2.65□□□□□ -2.83
DDX28Q9NUL7 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.67□□□□□ -2.84
DDX28Q9NUL7 RNU6-836P-201ENST00000362920 107 ntBASIC-2.67□□□□□ -2.84
DDX28Q9NUL7 RNU6-1326P-201ENST00000391262 107 ntBASIC-2.67□□□□□ -2.84
DDX28Q9NUL7 Y_RNA.685-201ENST00000516532 108 ntBASIC-2.67□□□□□ -2.84
DDX28Q9NUL7 RNU6-854P-201ENST00000364036 107 ntBASIC-2.68□□□□□ -2.84
DDX28Q9NUL7 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.7□□□□□ -2.84
DDX28Q9NUL7 Y_RNA.345-201ENST00000365384 92 ntBASIC-2.71□□□□□ -2.84
DDX28Q9NUL7 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.72□□□□□ -2.84
DDX28Q9NUL7 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.72□□□□□ -2.84
DDX28Q9NUL7 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.73□□□□□ -2.85
DDX28Q9NUL7 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.74□□□□□ -2.85
DDX28Q9NUL7 RNU6-808P-201ENST00000391233 108 ntBASIC-2.74□□□□□ -2.85
DDX28Q9NUL7 AL359920.1-201ENST00000618332 176 ntBASIC-2.74□□□□□ -2.85
DDX28Q9NUL7 Y_RNA.379-201ENST00000365653 102 ntBASIC-2.75□□□□□ -2.85
DDX28Q9NUL7 RNU6-1275P-201ENST00000391087 107 ntBASIC-2.75□□□□□ -2.85
DDX28Q9NUL7 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.75□□□□□ -2.85
DDX28Q9NUL7 AC079150.2-201ENST00000443733 78 ntBASIC-2.76□□□□□ -2.85
DDX28Q9NUL7 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.78□□□□□ -2.85
DDX28Q9NUL7 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.78□□□□□ -2.85
DDX28Q9NUL7 RNU6-838P-201ENST00000363399 108 ntBASIC-2.81□□□□□ -2.86
DDX28Q9NUL7 RNU6-986P-201ENST00000363133 102 ntBASIC-2.82□□□□□ -2.86
DDX28Q9NUL7 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-2.82□□□□□ -2.86
DDX28Q9NUL7 RNU6-788P-201ENST00000390967 104 ntBASIC-2.83□□□□□ -2.86
DDX28Q9NUL7 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.83□□□□□ -2.86
DDX28Q9NUL7 MIR545-201ENST00000385085 106 ntBASIC-2.84□□□□□ -2.86
DDX28Q9NUL7 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.85□□□□□ -2.87
DDX28Q9NUL7 MIR124-1-201ENST00000385275 85 ntBASIC-2.85□□□□□ -2.87
DDX28Q9NUL7 SNORD115-45-201ENST00000391078 81 ntBASIC-2.85□□□□□ -2.87
DDX28Q9NUL7 AC125388.1-201ENST00000459631 156 ntBASIC-2.85□□□□□ -2.87
DDX28Q9NUL7 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.85□□□□□ -2.87
DDX28Q9NUL7 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.85□□□□□ -2.87
DDX28Q9NUL7 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.86□□□□□ -2.87
DDX28Q9NUL7 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.87□□□□□ -2.87
DDX28Q9NUL7 RNU6-59P-201ENST00000384787 107 ntBASIC-2.88□□□□□ -2.87
DDX28Q9NUL7 RNU6-803P-201ENST00000516034 102 ntBASIC-2.88□□□□□ -2.87
DDX28Q9NUL7 RNU6-753P-201ENST00000363926 107 ntBASIC-2.89□□□□□ -2.87
DDX28Q9NUL7 SNORD114-13-201ENST00000364377 74 ntBASIC-2.91□□□□□ -2.88
DDX28Q9NUL7 MIR548AH-201ENST00000637109 76 ntBASIC-2.92□□□□□ -2.88
DDX28Q9NUL7 RNU6-936P-201ENST00000384005 107 ntBASIC-2.93□□□□□ -2.88
DDX28Q9NUL7 RNU6-499P-201ENST00000365615 107 ntBASIC-2.95□□□□□ -2.88
DDX28Q9NUL7 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.96□□□□□ -2.88
DDX28Q9NUL7 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.97□□□□□ -2.88
DDX28Q9NUL7 RNU6-422P-201ENST00000384632 107 ntBASIC-2.99□□□□□ -2.89
DDX28Q9NUL7 RNU6-930P-201ENST00000390938 100 ntBASIC-2.99□□□□□ -2.89
DDX28Q9NUL7 MIR548F3-201ENST00000408509 87 ntBASIC-2.99□□□□□ -2.89
DDX28Q9NUL7 RNU6-638P-201ENST00000516582 104 ntBASIC-3.04□□□□□ -2.9
DDX28Q9NUL7 MIR509-1-201ENST00000385265 94 ntBASIC-3.08□□□□□ -2.9
DDX28Q9NUL7 MIR509-2-201ENST00000390724 91 ntBASIC-3.08□□□□□ -2.9
DDX28Q9NUL7 SNORA72.7-201ENST00000516349 94 ntBASIC-3.13□□□□□ -2.91
DDX28Q9NUL7 Y_RNA.406-201ENST00000383984 100 ntBASIC-3.14□□□□□ -2.91
DDX28Q9NUL7 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.14□□□□□ -2.91
DDX28Q9NUL7 RNU6-1043P-201ENST00000410355 99 ntBASIC-3.14□□□□□ -2.91
DDX28Q9NUL7 RNU6-614P-201ENST00000384369 107 ntBASIC-3.16□□□□□ -2.92
DDX28Q9NUL7 U6.59-201ENST00000615686 107 ntBASIC-3.16□□□□□ -2.92
DDX28Q9NUL7 DLEU2_4.2-201ENST00000616613 58 ntBASIC-3.21□□□□□ -2.92
DDX28Q9NUL7 RNA5SP106-201ENST00000517274 100 ntBASIC-3.22□□□□□ -2.92
DDX28Q9NUL7 RNY4P10-201ENST00000365571 96 ntBASIC-3.24□□□□□ -2.93
DDX28Q9NUL7 RNU6-987P-201ENST00000384759 104 ntBASIC-3.3□□□□□ -2.94
DDX28Q9NUL7 Y_RNA.657-201ENST00000515983 102 ntBASIC-3.3□□□□□ -2.94
DDX28Q9NUL7 RNU6-665P-201ENST00000384639 107 ntBASIC-3.32□□□□□ -2.94
DDX28Q9NUL7 SNORD111B-201ENST00000408587 80 ntBASIC-3.33□□□□□ -2.94
DDX28Q9NUL7 RNU6-1024P-201ENST00000384199 107 ntBASIC-3.36□□□□□ -2.95
Retrieved 100 of 98,524 protein–RNA pairs in 269.1 ms