Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.54□□□□□ -2.66
LHX1P48742 MIR198-201ENST00000637333 62 ntBASIC-1.54□□□□□ -2.66
LHX1P48742 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.55□□□□□ -2.66
LHX1P48742 MIR496-201ENST00000385226 102 ntBASIC-1.55□□□□□ -2.66
LHX1P48742 AC079150.2-201ENST00000443733 78 ntBASIC-1.55□□□□□ -2.66
LHX1P48742 RNU6-854P-201ENST00000364036 107 ntBASIC-1.56□□□□□ -2.66
LHX1P48742 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.56□□□□□ -2.66
LHX1P48742 MIR656-201ENST00000385224 78 ntBASIC-1.56□□□□□ -2.66
LHX1P48742 RNY4P27-201ENST00000363341 96 ntBASIC-1.57□□□□□ -2.66
LHX1P48742 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.57□□□□□ -2.66
LHX1P48742 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.57□□□□□ -2.66
LHX1P48742 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.57□□□□□ -2.66
LHX1P48742 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.57□□□□□ -2.66
LHX1P48742 SNORD45C-201ENST00000383893 79 ntBASIC-1.58□□□□□ -2.66
LHX1P48742 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.58□□□□□ -2.66
LHX1P48742 RNU6-836P-201ENST00000362920 107 ntBASIC-1.59□□□□□ -2.66
LHX1P48742 RNU6-838P-201ENST00000363399 108 ntBASIC-1.59□□□□□ -2.66
LHX1P48742 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.59□□□□□ -2.66
LHX1P48742 RNU6-808P-201ENST00000391233 108 ntBASIC-1.59□□□□□ -2.66
LHX1P48742 MIR5693-201ENST00000577722 73 ntBASIC-1.59□□□□□ -2.66
LHX1P48742 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.6□□□□□ -2.67
LHX1P48742 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.62□□□□□ -2.67
LHX1P48742 SNORD115.2-201ENST00000391126 59 ntBASIC-1.62□□□□□ -2.67
LHX1P48742 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.63□□□□□ -2.67
LHX1P48742 RNU6-59P-201ENST00000384787 107 ntBASIC-1.63□□□□□ -2.67
LHX1P48742 U4.2-201ENST00000618561 85 ntBASIC-1.63□□□□□ -2.67
LHX1P48742 RNU6-986P-201ENST00000363133 102 ntBASIC-1.64□□□□□ -2.67
LHX1P48742 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.64□□□□□ -2.67
LHX1P48742 RNY4P25-201ENST00000459254 96 ntBASIC-1.64□□□□□ -2.67
LHX1P48742 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.64□□□□□ -2.67
LHX1P48742 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.64□□□□□ -2.67
LHX1P48742 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.64□□□□□ -2.67
LHX1P48742 AL359920.1-201ENST00000618332 176 ntBASIC-1.64□□□□□ -2.67
LHX1P48742 RNU6-737P-201ENST00000365370 107 ntBASIC-1.65□□□□□ -2.67
LHX1P48742 AC125388.1-201ENST00000459631 156 ntBASIC-1.65□□□□□ -2.67
LHX1P48742 RNU6-230P-201ENST00000362457 104 ntBASIC-1.66□□□□□ -2.68
LHX1P48742 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.66□□□□□ -2.68
LHX1P48742 RNU6-119P-201ENST00000364882 107 ntBASIC-1.66□□□□□ -2.68
LHX1P48742 RNU6-499P-201ENST00000365615 107 ntBASIC-1.66□□□□□ -2.68
LHX1P48742 RNU6-638P-201ENST00000516582 104 ntBASIC-1.66□□□□□ -2.68
LHX1P48742 RNA5SP331-201ENST00000364986 107 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 MIR545-201ENST00000385085 106 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 RNU6-788P-201ENST00000390967 104 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 MIR548F3-201ENST00000408509 87 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 SNORD54-201ENST00000459159 67 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.67□□□□□ -2.68
LHX1P48742 RNU6-753P-201ENST00000363926 107 ntBASIC-1.68□□□□□ -2.68
LHX1P48742 MIR124-1-201ENST00000385275 85 ntBASIC-1.69□□□□□ -2.68
LHX1P48742 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.69□□□□□ -2.68
LHX1P48742 AL627230.5-201ENST00000619807 58 ntBASIC-1.69□□□□□ -2.68
LHX1P48742 SNORD114-3-201ENST00000364969 75 ntBASIC-1.7□□□□□ -2.68
LHX1P48742 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.7□□□□□ -2.68
LHX1P48742 RNU6-936P-201ENST00000384005 107 ntBASIC-1.71□□□□□ -2.68
LHX1P48742 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.71□□□□□ -2.68
LHX1P48742 SNORD114-13-201ENST00000364377 74 ntBASIC-1.72□□□□□ -2.68
LHX1P48742 RNU6-930P-201ENST00000390938 100 ntBASIC-1.74□□□□□ -2.69
LHX1P48742 SNORD115-45-201ENST00000391078 81 ntBASIC-1.74□□□□□ -2.69
LHX1P48742 SNORA72.7-201ENST00000516349 94 ntBASIC-1.74□□□□□ -2.69
LHX1P48742 MIR548AH-201ENST00000637109 76 ntBASIC-1.74□□□□□ -2.69
LHX1P48742 RNA5SP93-201ENST00000362525 114 ntBASIC-1.75□□□□□ -2.69
LHX1P48742 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.75□□□□□ -2.69
LHX1P48742 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.78□□□□□ -2.69
LHX1P48742 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.79□□□□□ -2.7
LHX1P48742 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.8□□□□□ -2.7
LHX1P48742 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.8□□□□□ -2.7
LHX1P48742 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.82□□□□□ -2.7
LHX1P48742 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.82□□□□□ -2.7
LHX1P48742 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.82□□□□□ -2.7
LHX1P48742 RNU6-614P-201ENST00000384369 107 ntBASIC-1.84□□□□□ -2.7
LHX1P48742 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.84□□□□□ -2.7
LHX1P48742 U6.59-201ENST00000615686 107 ntBASIC-1.84□□□□□ -2.7
LHX1P48742 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.87□□□□□ -2.71
LHX1P48742 RNU6-422P-201ENST00000384632 107 ntBASIC-1.87□□□□□ -2.71
LHX1P48742 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.88□□□□□ -2.71
LHX1P48742 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.9□□□□□ -2.71
LHX1P48742 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.94□□□□□ -2.72
LHX1P48742 MIR509-1-201ENST00000385265 94 ntBASIC-1.94□□□□□ -2.72
LHX1P48742 MIR509-2-201ENST00000390724 91 ntBASIC-1.94□□□□□ -2.72
LHX1P48742 RNU6-803P-201ENST00000516034 102 ntBASIC-1.94□□□□□ -2.72
LHX1P48742 MIR1207-201ENST00000408249 87 ntBASIC-1.95□□□□□ -2.72
LHX1P48742 SNORD111B-201ENST00000408587 80 ntBASIC-1.97□□□□□ -2.72
LHX1P48742 RNA5SP106-201ENST00000517274 100 ntBASIC-1.98□□□□□ -2.73
LHX1P48742 MTND4LP19-201ENST00000403051 166 ntBASIC-1.99□□□□□ -2.73
LHX1P48742 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.01□□□□□ -2.73
LHX1P48742 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.01□□□□□ -2.73
LHX1P48742 MIR4723-201ENST00000585070 81 ntBASIC-2.01□□□□□ -2.73
LHX1P48742 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.02□□□□□ -2.73
LHX1P48742 RNU6-665P-201ENST00000384639 107 ntBASIC-2.02□□□□□ -2.73
LHX1P48742 RNU6-987P-201ENST00000384759 104 ntBASIC-2.02□□□□□ -2.73
LHX1P48742 RNY4P10-201ENST00000365571 96 ntBASIC-2.03□□□□□ -2.73
LHX1P48742 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.03□□□□□ -2.73
LHX1P48742 RNU6-485P-201ENST00000363475 107 ntBASIC-2.04□□□□□ -2.74
LHX1P48742 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.05□□□□□ -2.74
LHX1P48742 U6.103-201ENST00000637085 61 ntBASIC-2.06□□□□□ -2.74
LHX1P48742 RNU6-1091P-201ENST00000363945 107 ntBASIC-2.1□□□□□ -2.75
LHX1P48742 RNU4-85P-201ENST00000364675 123 ntBASIC-2.11□□□□□ -2.75
LHX1P48742 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-2.11□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 253.3 ms