Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.02□□□□□ -2.57
HOXD3P31249 RNY4P9-201ENST00000363194 97 ntBASIC-1.03□□□□□ -2.57
HOXD3P31249 RNU6-912P-201ENST00000363800 104 ntBASIC-1.03□□□□□ -2.57
HOXD3P31249 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.03□□□□□ -2.57
HOXD3P31249 MIR202-201ENST00000362219 110 ntBASIC-1.04□□□□□ -2.58
HOXD3P31249 SNORD18C-201ENST00000362704 69 ntBASIC-1.04□□□□□ -2.58
HOXD3P31249 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.04□□□□□ -2.58
HOXD3P31249 RNU4-33P-201ENST00000364316 85 ntBASIC-1.04□□□□□ -2.58
HOXD3P31249 MIR548N-201ENST00000408742 75 ntBASIC-1.04□□□□□ -2.58
HOXD3P31249 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.04□□□□□ -2.58
HOXD3P31249 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.05□□□□□ -2.58
HOXD3P31249 RNU6-614P-201ENST00000384369 107 ntBASIC-1.05□□□□□ -2.58
HOXD3P31249 U6.59-201ENST00000615686 107 ntBASIC-1.05□□□□□ -2.58
HOXD3P31249 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.06□□□□□ -2.58
HOXD3P31249 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.06□□□□□ -2.58
HOXD3P31249 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.06□□□□□ -2.58
HOXD3P31249 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.07□□□□□ -2.58
HOXD3P31249 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.08□□□□□ -2.58
HOXD3P31249 RNU6-361P-201ENST00000364454 107 ntBASIC-1.08□□□□□ -2.58
HOXD3P31249 RNU6-742P-201ENST00000365289 107 ntBASIC-1.09□□□□□ -2.58
HOXD3P31249 RNU6-936P-201ENST00000384005 107 ntBASIC-1.09□□□□□ -2.58
HOXD3P31249 MTND4LP19-201ENST00000403051 166 ntBASIC-1.09□□□□□ -2.58
HOXD3P31249 AL731768.1-201ENST00000603124 139 ntBASIC-1.09□□□□□ -2.58
HOXD3P31249 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.1□□□□□ -2.59
HOXD3P31249 MIR1254-1-201ENST00000408257 97 ntBASIC-1.1□□□□□ -2.59
HOXD3P31249 SNORA17.4-201ENST00000391287 132 ntBASIC-1.11□□□□□ -2.59
HOXD3P31249 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.11□□□□□ -2.59
HOXD3P31249 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.11□□□□□ -2.59
HOXD3P31249 SNORD60-201ENST00000383903 83 ntBASIC-1.12□□□□□ -2.59
HOXD3P31249 RNU6-803P-201ENST00000516034 102 ntBASIC-1.12□□□□□ -2.59
HOXD3P31249 RNY4P25-201ENST00000459254 96 ntBASIC-1.13□□□□□ -2.59
HOXD3P31249 MIR4426-201ENST00000640330 63 ntBASIC-1.13□□□□□ -2.59
HOXD3P31249 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.14□□□□□ -2.59
HOXD3P31249 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.14□□□□□ -2.59
HOXD3P31249 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.15□□□□□ -2.59
HOXD3P31249 SNORD114-13-201ENST00000364377 74 ntBASIC-1.15□□□□□ -2.59
HOXD3P31249 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.15□□□□□ -2.59
HOXD3P31249 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.15□□□□□ -2.59
HOXD3P31249 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.16□□□□□ -2.6
HOXD3P31249 RNU6-854P-201ENST00000364036 107 ntBASIC-1.17□□□□□ -2.6
HOXD3P31249 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.17□□□□□ -2.6
HOXD3P31249 AL359920.1-201ENST00000618332 176 ntBASIC-1.17□□□□□ -2.6
HOXD3P31249 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.17□□□□□ -2.6
HOXD3P31249 MIR379-201ENST00000362218 67 ntBASIC-1.18□□□□□ -2.6
HOXD3P31249 RNU6-753P-201ENST00000363926 107 ntBASIC-1.18□□□□□ -2.6
HOXD3P31249 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.18□□□□□ -2.6
HOXD3P31249 SNORD115-45-201ENST00000391078 81 ntBASIC-1.18□□□□□ -2.6
HOXD3P31249 RNA5SP106-201ENST00000517274 100 ntBASIC-1.18□□□□□ -2.6
HOXD3P31249 MIR124-1-201ENST00000385275 85 ntBASIC-1.19□□□□□ -2.6
HOXD3P31249 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.19□□□□□ -2.6
HOXD3P31249 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.2□□□□□ -2.6
HOXD3P31249 RNU6-300P-201ENST00000459080 104 ntBASIC-1.2□□□□□ -2.6
HOXD3P31249 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.2□□□□□ -2.6
HOXD3P31249 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.21□□□□□ -2.6
HOXD3P31249 MIR509-1-201ENST00000385265 94 ntBASIC-1.21□□□□□ -2.6
HOXD3P31249 MIR509-2-201ENST00000390724 91 ntBASIC-1.21□□□□□ -2.6
HOXD3P31249 RNU6-345P-201ENST00000517001 107 ntBASIC-1.21□□□□□ -2.6
HOXD3P31249 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 RNU6-737P-201ENST00000365370 107 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 RNY4P10-201ENST00000365571 96 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 RNU6-176P-201ENST00000517196 105 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 MIR548AH-201ENST00000637109 76 ntBASIC-1.22□□□□□ -2.6
HOXD3P31249 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.24□□□□□ -2.61
HOXD3P31249 RNU6-987P-201ENST00000384759 104 ntBASIC-1.24□□□□□ -2.61
HOXD3P31249 RNU6-808P-201ENST00000391233 108 ntBASIC-1.24□□□□□ -2.61
HOXD3P31249 MIR548AL-201ENST00000578416 97 ntBASIC-1.24□□□□□ -2.61
HOXD3P31249 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.27□□□□□ -2.61
HOXD3P31249 RNU6-838P-201ENST00000363399 108 ntBASIC-1.28□□□□□ -2.61
HOXD3P31249 RNA5SP224-201ENST00000365069 126 ntBASIC-1.28□□□□□ -2.61
HOXD3P31249 Y_RNA.657-201ENST00000515983 102 ntBASIC-1.28□□□□□ -2.61
HOXD3P31249 RNU6-665P-201ENST00000384639 107 ntBASIC-1.3□□□□□ -2.62
HOXD3P31249 MIR656-201ENST00000385224 78 ntBASIC-1.3□□□□□ -2.62
HOXD3P31249 SNORD45C-201ENST00000383893 79 ntBASIC-1.33□□□□□ -2.62
HOXD3P31249 MIR548H4-201ENST00000408689 111 ntBASIC-1.33□□□□□ -2.62
HOXD3P31249 MIR545-201ENST00000385085 106 ntBASIC-1.34□□□□□ -2.62
HOXD3P31249 RNU6-930P-201ENST00000390938 100 ntBASIC-1.34□□□□□ -2.62
HOXD3P31249 RNU4-37P-201ENST00000410214 84 ntBASIC-1.34□□□□□ -2.62
HOXD3P31249 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.35□□□□□ -2.63
HOXD3P31249 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.35□□□□□ -2.63
HOXD3P31249 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.36□□□□□ -2.63
HOXD3P31249 Y_RNA.520-201ENST00000384556 102 ntBASIC-1.36□□□□□ -2.63
HOXD3P31249 MIR4317-201ENST00000637586 65 ntBASIC-1.36□□□□□ -2.63
HOXD3P31249 RNU6-836P-201ENST00000362920 107 ntBASIC-1.38□□□□□ -2.63
HOXD3P31249 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.38□□□□□ -2.63
HOXD3P31249 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.38□□□□□ -2.63
HOXD3P31249 MIR548F3-201ENST00000408509 87 ntBASIC-1.38□□□□□ -2.63
HOXD3P31249 RNU6-822P-201ENST00000362707 106 ntBASIC-1.4□□□□□ -2.63
HOXD3P31249 RNU6-986P-201ENST00000363133 102 ntBASIC-1.4□□□□□ -2.63
HOXD3P31249 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.4□□□□□ -2.63
HOXD3P31249 SNORD115.2-201ENST00000391126 59 ntBASIC-1.42□□□□□ -2.64
HOXD3P31249 RNA5SP449-201ENST00000516871 130 ntBASIC-1.42□□□□□ -2.64
HOXD3P31249 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.45□□□□□ -2.64
HOXD3P31249 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.45□□□□□ -2.64
HOXD3P31249 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.46□□□□□ -2.64
HOXD3P31249 RNY4P13-201ENST00000384284 96 ntBASIC-1.47□□□□□ -2.64
HOXD3P31249 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.48□□□□□ -2.65
HOXD3P31249 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.48□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 196.6 ms