Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MIR1246-201ENST00000636535 73 ntBASIC-0.9□□□□□ -2.55
LIMCH1Q9UPQ0 AC138207.3-201ENST00000585289 166 ntBASIC-0.91□□□□□ -2.56
LIMCH1Q9UPQ0 RNU4-33P-201ENST00000364316 85 ntBASIC-0.92□□□□□ -2.56
LIMCH1Q9UPQ0 RNU6-576P-201ENST00000390854 102 ntBASIC-0.92□□□□□ -2.56
LIMCH1Q9UPQ0 HLA-S-202ENST00000425174 53 ntBASIC-0.92□□□□□ -2.56
LIMCH1Q9UPQ0 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.92□□□□□ -2.56
LIMCH1Q9UPQ0 AC018880.2-201ENST00000414265 201 ntBASIC-0.93□□□□□ -2.56
LIMCH1Q9UPQ0 MIR5591-201ENST00000578248 65 ntBASIC-0.93□□□□□ -2.56
LIMCH1Q9UPQ0 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.93□□□□□ -2.56
LIMCH1Q9UPQ0 RNU6-530P-201ENST00000391180 107 ntBASIC-0.94□□□□□ -2.56
LIMCH1Q9UPQ0 MTND4LP19-201ENST00000403051 166 ntBASIC-0.94□□□□□ -2.56
LIMCH1Q9UPQ0 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.94□□□□□ -2.56
LIMCH1Q9UPQ0 RNU6-980P-201ENST00000516925 103 ntBASIC-0.94□□□□□ -2.56
LIMCH1Q9UPQ0 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.98□□□□□ -2.57
LIMCH1Q9UPQ0 RNU6-361P-201ENST00000364454 107 ntBASIC-0.98□□□□□ -2.57
LIMCH1Q9UPQ0 RNY3P8-201ENST00000411366 126 ntBASIC-0.98□□□□□ -2.57
LIMCH1Q9UPQ0 AC120024.2-201ENST00000576526 175 ntBASIC-0.98□□□□□ -2.57
LIMCH1Q9UPQ0 MIR4770-201ENST00000579149 58 ntBASIC-0.98□□□□□ -2.57
LIMCH1Q9UPQ0 MIR6502-201ENST00000617296 76 ntBASIC-0.98□□□□□ -2.57
LIMCH1Q9UPQ0 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.99□□□□□ -2.57
LIMCH1Q9UPQ0 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.99□□□□□ -2.57
LIMCH1Q9UPQ0 RNU6-79P-201ENST00000362511 107 ntBASIC-1□□□□□ -2.57
LIMCH1Q9UPQ0 RNU6-808P-201ENST00000391233 108 ntBASIC-1□□□□□ -2.57
LIMCH1Q9UPQ0 SNORD60-201ENST00000383903 83 ntBASIC-1.01□□□□□ -2.57
LIMCH1Q9UPQ0 RNU6-936P-201ENST00000384005 107 ntBASIC-1.01□□□□□ -2.57
LIMCH1Q9UPQ0 SNORA17.4-201ENST00000391287 132 ntBASIC-1.02□□□□□ -2.57
LIMCH1Q9UPQ0 RNU6-983P-201ENST00000516004 103 ntBASIC-1.02□□□□□ -2.57
LIMCH1Q9UPQ0 RNA5SP86-201ENST00000390869 98 ntBASIC-1.03□□□□□ -2.57
LIMCH1Q9UPQ0 AC091912.2-201ENST00000624798 167 ntBASIC-1.03□□□□□ -2.57
LIMCH1Q9UPQ0 MIR202-201ENST00000362219 110 ntBASIC-1.04□□□□□ -2.58
LIMCH1Q9UPQ0 AC013734.1-201ENST00000619329 111 ntBASIC-1.04□□□□□ -2.58
LIMCH1Q9UPQ0 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.05□□□□□ -2.58
LIMCH1Q9UPQ0 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.05□□□□□ -2.58
LIMCH1Q9UPQ0 MIR4520-1-201ENST00000582609 70 ntBASIC-1.05□□□□□ -2.58
LIMCH1Q9UPQ0 RNU6-563P-201ENST00000364872 108 ntBASIC-1.06□□□□□ -2.58
LIMCH1Q9UPQ0 MIR6874-201ENST00000635894 71 ntBASIC-1.06□□□□□ -2.58
LIMCH1Q9UPQ0 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.08□□□□□ -2.58
LIMCH1Q9UPQ0 RNU6-176P-201ENST00000517196 105 ntBASIC-1.08□□□□□ -2.58
LIMCH1Q9UPQ0 MIR4426-201ENST00000640330 63 ntBASIC-1.08□□□□□ -2.58
LIMCH1Q9UPQ0 SNORD18.1-201ENST00000363807 70 ntBASIC-1.09□□□□□ -2.58
LIMCH1Q9UPQ0 RNU6-753P-201ENST00000363926 107 ntBASIC-1.09□□□□□ -2.58
LIMCH1Q9UPQ0 MIR548N-201ENST00000408742 75 ntBASIC-1.09□□□□□ -2.58
LIMCH1Q9UPQ0 RNU6-742P-201ENST00000365289 107 ntBASIC-1.1□□□□□ -2.59
LIMCH1Q9UPQ0 RNU6-400P-201ENST00000391173 106 ntBASIC-1.11□□□□□ -2.59
LIMCH1Q9UPQ0 MIR496-201ENST00000385226 102 ntBASIC-1.12□□□□□ -2.59
LIMCH1Q9UPQ0 RNU6-300P-201ENST00000459080 104 ntBASIC-1.12□□□□□ -2.59
LIMCH1Q9UPQ0 U6.97-201ENST00000636904 101 ntBASIC-1.12□□□□□ -2.59
LIMCH1Q9UPQ0 RNY4P7-201ENST00000364600 96 ntBASIC-1.13□□□□□ -2.59
LIMCH1Q9UPQ0 MIR548AL-201ENST00000578416 97 ntBASIC-1.13□□□□□ -2.59
LIMCH1Q9UPQ0 RNU6-838P-201ENST00000363399 108 ntBASIC-1.14□□□□□ -2.59
LIMCH1Q9UPQ0 MIR487B-201ENST00000385021 84 ntBASIC-1.14□□□□□ -2.59
LIMCH1Q9UPQ0 RNU4-37P-201ENST00000410214 84 ntBASIC-1.14□□□□□ -2.59
LIMCH1Q9UPQ0 SNORD18C-201ENST00000362704 69 ntBASIC-1.15□□□□□ -2.59
LIMCH1Q9UPQ0 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.15□□□□□ -2.59
LIMCH1Q9UPQ0 RNU6-987P-201ENST00000384759 104 ntBASIC-1.16□□□□□ -2.6
LIMCH1Q9UPQ0 MIR548H1-201ENST00000408610 102 ntBASIC-1.17□□□□□ -2.6
LIMCH1Q9UPQ0 AC108019.1-201ENST00000512540 175 ntBASIC-1.17□□□□□ -2.6
LIMCH1Q9UPQ0 MIR4756-201ENST00000577874 78 ntBASIC-1.17□□□□□ -2.6
LIMCH1Q9UPQ0 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.18□□□□□ -2.6
LIMCH1Q9UPQ0 RNU6-119P-201ENST00000364882 107 ntBASIC-1.18□□□□□ -2.6
LIMCH1Q9UPQ0 MIR581-201ENST00000384895 96 ntBASIC-1.18□□□□□ -2.6
LIMCH1Q9UPQ0 RNU6-118P-201ENST00000516552 102 ntBASIC-1.18□□□□□ -2.6
LIMCH1Q9UPQ0 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.18□□□□□ -2.6
LIMCH1Q9UPQ0 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.19□□□□□ -2.6
LIMCH1Q9UPQ0 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.19□□□□□ -2.6
LIMCH1Q9UPQ0 RNU6-141P-201ENST00000410499 105 ntBASIC-1.2□□□□□ -2.6
LIMCH1Q9UPQ0 MIR664B-201ENST00000626756 61 ntBASIC-1.21□□□□□ -2.6
LIMCH1Q9UPQ0 RNU6-930P-201ENST00000390938 100 ntBASIC-1.22□□□□□ -2.6
LIMCH1Q9UPQ0 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.22□□□□□ -2.6
LIMCH1Q9UPQ0 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.23□□□□□ -2.61
LIMCH1Q9UPQ0 RNU6-695P-201ENST00000391157 104 ntBASIC-1.23□□□□□ -2.61
LIMCH1Q9UPQ0 MIR4317-201ENST00000637586 65 ntBASIC-1.23□□□□□ -2.61
LIMCH1Q9UPQ0 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.24□□□□□ -2.61
LIMCH1Q9UPQ0 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.24□□□□□ -2.61
LIMCH1Q9UPQ0 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.24□□□□□ -2.61
LIMCH1Q9UPQ0 MIR3139-201ENST00000579145 76 ntBASIC-1.24□□□□□ -2.61
LIMCH1Q9UPQ0 RNU4-88P-201ENST00000411220 86 ntBASIC-1.25□□□□□ -2.61
LIMCH1Q9UPQ0 MIR379-201ENST00000362218 67 ntBASIC-1.26□□□□□ -2.61
LIMCH1Q9UPQ0 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.27□□□□□ -2.61
LIMCH1Q9UPQ0 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.27□□□□□ -2.61
LIMCH1Q9UPQ0 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.27□□□□□ -2.61
LIMCH1Q9UPQ0 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.27□□□□□ -2.61
LIMCH1Q9UPQ0 RNA5SP93-201ENST00000362525 114 ntBASIC-1.28□□□□□ -2.61
LIMCH1Q9UPQ0 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.29□□□□□ -2.62
LIMCH1Q9UPQ0 MIR548F3-201ENST00000408509 87 ntBASIC-1.29□□□□□ -2.62
LIMCH1Q9UPQ0 RNA5SP405-201ENST00000363059 114 ntBASIC-1.3□□□□□ -2.62
LIMCH1Q9UPQ0 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.3□□□□□ -2.62
LIMCH1Q9UPQ0 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.3□□□□□ -2.62
LIMCH1Q9UPQ0 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.31□□□□□ -2.62
LIMCH1Q9UPQ0 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.31□□□□□ -2.62
LIMCH1Q9UPQ0 MT-TM-201ENST00000387377 68 ntBASIC-1.32□□□□□ -2.62
LIMCH1Q9UPQ0 MIR548H4-201ENST00000408689 111 ntBASIC-1.32□□□□□ -2.62
LIMCH1Q9UPQ0 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.33□□□□□ -2.62
LIMCH1Q9UPQ0 RNU6-68P-201ENST00000516576 104 ntBASIC-1.33□□□□□ -2.62
LIMCH1Q9UPQ0 MIR3123-201ENST00000583417 75 ntBASIC-1.33□□□□□ -2.62
LIMCH1Q9UPQ0 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.34□□□□□ -2.62
LIMCH1Q9UPQ0 SNORD54-201ENST00000459159 67 ntBASIC-1.34□□□□□ -2.62
LIMCH1Q9UPQ0 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.34□□□□□ -2.62
LIMCH1Q9UPQ0 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.36□□□□□ -2.63
LIMCH1Q9UPQ0 RNU6-841P-201ENST00000383872 107 ntBASIC-1.39□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 203.9 ms