Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-361P-201ENST00000364454 107 ntBASIC-3.23□□□□□ -2.93
CCDC43Q96MW1 Y_RNA.443-201ENST00000384135 111 ntBASIC-3.23□□□□□ -2.93
CCDC43Q96MW1 SNORA40B-201ENST00000385573 128 ntBASIC-3.23□□□□□ -2.93
CCDC43Q96MW1 SNORA17.4-201ENST00000391287 132 ntBASIC-3.23□□□□□ -2.93
CCDC43Q96MW1 RNU6-1015P-201ENST00000517121 99 ntBASIC-3.23□□□□□ -2.93
CCDC43Q96MW1 RNU6-787P-201ENST00000384032 107 ntBASIC-3.25□□□□□ -2.93
CCDC43Q96MW1 RNU6-294P-201ENST00000364999 102 ntBASIC-3.26□□□□□ -2.93
CCDC43Q96MW1 AC097484.2-201ENST00000509147 251 ntBASIC-3.27□□□□□ -2.93
CCDC43Q96MW1 RNU6-230P-201ENST00000362457 104 ntBASIC-3.28□□□□□ -2.93
CCDC43Q96MW1 RNU6-122P-201ENST00000516818 107 ntBASIC-3.28□□□□□ -2.93
CCDC43Q96MW1 MIR466-201ENST00000580653 84 ntBASIC-3.28□□□□□ -2.93
CCDC43Q96MW1 U7.4-201ENST00000614961 63 ntBASIC-3.28□□□□□ -2.93
CCDC43Q96MW1 RNU6-1121P-201ENST00000516802 109 ntBASIC-3.29□□□□□ -2.94
CCDC43Q96MW1 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.3□□□□□ -2.94
CCDC43Q96MW1 RNU6-663P-201ENST00000391105 106 ntBASIC-3.3□□□□□ -2.94
CCDC43Q96MW1 AL603908.1-201ENST00000406098 201 ntBASIC-3.3□□□□□ -2.94
CCDC43Q96MW1 RNU6-634P-201ENST00000459134 106 ntBASIC-3.3□□□□□ -2.94
CCDC43Q96MW1 MIR4748-201ENST00000578076 82 ntBASIC-3.3□□□□□ -2.94
CCDC43Q96MW1 FTX_4.1-201ENST00000616291 147 ntBASIC-3.3□□□□□ -2.94
CCDC43Q96MW1 SNORA25.5-201ENST00000363782 126 ntBASIC-3.31□□□□□ -2.94
CCDC43Q96MW1 RNU6-153P-201ENST00000364422 104 ntBASIC-3.31□□□□□ -2.94
CCDC43Q96MW1 SNORA40.16-201ENST00000517238 121 ntBASIC-3.31□□□□□ -2.94
CCDC43Q96MW1 RNU6-530P-201ENST00000391180 107 ntBASIC-3.32□□□□□ -2.94
CCDC43Q96MW1 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.34□□□□□ -2.94
CCDC43Q96MW1 Y_RNA.566-201ENST00000384735 101 ntBASIC-3.34□□□□□ -2.94
CCDC43Q96MW1 Y_RNA.694-201ENST00000516677 117 ntBASIC-3.34□□□□□ -2.94
CCDC43Q96MW1 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.35□□□□□ -2.95
CCDC43Q96MW1 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.35□□□□□ -2.95
CCDC43Q96MW1 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.35□□□□□ -2.95
CCDC43Q96MW1 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.35□□□□□ -2.95
CCDC43Q96MW1 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.35□□□□□ -2.95
CCDC43Q96MW1 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.35□□□□□ -2.95
CCDC43Q96MW1 RNU7-119P-201ENST00000459279 63 ntBASIC-3.36□□□□□ -2.95
CCDC43Q96MW1 SNORD45.2-201ENST00000363552 72 ntBASIC-3.37□□□□□ -2.95
CCDC43Q96MW1 SNORA25.4-201ENST00000363666 124 ntBASIC-3.37□□□□□ -2.95
CCDC43Q96MW1 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.37□□□□□ -2.95
CCDC43Q96MW1 RNU6-820P-201ENST00000384273 107 ntBASIC-3.37□□□□□ -2.95
CCDC43Q96MW1 AL451105.1-201ENST00000450005 189 ntBASIC-3.37□□□□□ -2.95
CCDC43Q96MW1 MIR4426-201ENST00000640330 63 ntBASIC-3.4□□□□□ -2.95
CCDC43Q96MW1 MIR379-201ENST00000362218 67 ntBASIC-3.41□□□□□ -2.96
CCDC43Q96MW1 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.41□□□□□ -2.96
CCDC43Q96MW1 MIR5582-201ENST00000579697 68 ntBASIC-3.41□□□□□ -2.96
CCDC43Q96MW1 RNU6-406P-201ENST00000516470 107 ntBASIC-3.42□□□□□ -2.96
CCDC43Q96MW1 RNU6-68P-201ENST00000516576 104 ntBASIC-3.42□□□□□ -2.96
CCDC43Q96MW1 SNORD30.1-201ENST00000391309 70 ntBASIC-3.43□□□□□ -2.96
CCDC43Q96MW1 AC062037.1-201ENST00000605302 128 ntBASIC-3.43□□□□□ -2.96
CCDC43Q96MW1 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.44□□□□□ -2.96
CCDC43Q96MW1 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.45□□□□□ -2.96
CCDC43Q96MW1 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.45□□□□□ -2.96
CCDC43Q96MW1 RNU6-803P-201ENST00000516034 102 ntBASIC-3.46□□□□□ -2.96
CCDC43Q96MW1 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.46□□□□□ -2.96
CCDC43Q96MW1 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.47□□□□□ -2.96
CCDC43Q96MW1 SNORD113-3-201ENST00000364830 72 ntBASIC-3.47□□□□□ -2.96
CCDC43Q96MW1 Y_RNA.369-201ENST00000365568 117 ntBASIC-3.48□□□□□ -2.97
CCDC43Q96MW1 RNU6-300P-201ENST00000459080 104 ntBASIC-3.48□□□□□ -2.97
CCDC43Q96MW1 RNU6-176P-201ENST00000517196 105 ntBASIC-3.48□□□□□ -2.97
CCDC43Q96MW1 RNU6-590P-201ENST00000365039 107 ntBASIC-3.49□□□□□ -2.97
CCDC43Q96MW1 RNU6-912P-201ENST00000363800 104 ntBASIC-3.5□□□□□ -2.97
CCDC43Q96MW1 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.5□□□□□ -2.97
CCDC43Q96MW1 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.5□□□□□ -2.97
CCDC43Q96MW1 RNU6-940P-201ENST00000363433 104 ntBASIC-3.51□□□□□ -2.97
CCDC43Q96MW1 MIR4511-201ENST00000582784 87 ntBASIC-3.51□□□□□ -2.97
CCDC43Q96MW1 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.52□□□□□ -2.97
CCDC43Q96MW1 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.53□□□□□ -2.97
CCDC43Q96MW1 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.53□□□□□ -2.97
CCDC43Q96MW1 RNU6-419P-201ENST00000517030 63 ntBASIC-3.54□□□□□ -2.98
CCDC43Q96MW1 AC103706.3-201ENST00000636297 85 ntBASIC-3.54□□□□□ -2.98
CCDC43Q96MW1 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.56□□□□□ -2.98
CCDC43Q96MW1 RNY4P9-201ENST00000363194 97 ntBASIC-3.56□□□□□ -2.98
CCDC43Q96MW1 RNU6-871P-201ENST00000516122 100 ntBASIC-3.56□□□□□ -2.98
CCDC43Q96MW1 MIR3938-201ENST00000582157 103 ntBASIC-3.56□□□□□ -2.98
CCDC43Q96MW1 U6.111-201ENST00000636093 83 ntBASIC-3.58□□□□□ -2.98
CCDC43Q96MW1 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.6□□□□□ -2.99
CCDC43Q96MW1 U2.22-201ENST00000636441 106 ntBASIC-3.6□□□□□ -2.99
CCDC43Q96MW1 RNU6-539P-201ENST00000516665 103 ntBASIC-3.61□□□□□ -2.99
CCDC43Q96MW1 MIR3202-2-201ENST00000635980 79 ntBASIC-3.61□□□□□ -2.99
CCDC43Q96MW1 RNU6-141P-201ENST00000410499 105 ntBASIC-3.62□□□□□ -2.99
CCDC43Q96MW1 Y_RNA.320-201ENST00000365144 102 ntBASIC-3.63□□□□□ -2.99
CCDC43Q96MW1 RNU6-742P-201ENST00000365289 107 ntBASIC-3.64□□□□□ -2.99
CCDC43Q96MW1 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.65□□□□□ -2.99
CCDC43Q96MW1 RNU6-573P-201ENST00000383938 106 ntBASIC-3.66□□□□□ -3
CCDC43Q96MW1 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.67□□□□□ -3
CCDC43Q96MW1 Y_RNA.519-201ENST00000384553 102 ntBASIC-3.67□□□□□ -3
CCDC43Q96MW1 MIR1255A-201ENST00000408338 113 ntBASIC-3.67□□□□□ -3
CCDC43Q96MW1 RNU6-857P-201ENST00000515893 110 ntBASIC-3.67□□□□□ -3
CCDC43Q96MW1 MIR4679-1-201ENST00000637619 75 ntBASIC-3.69□□□□□ -3
CCDC43Q96MW1 SNORD73B-201ENST00000364394 72 ntBASIC-3.71□□□□□ -3
CCDC43Q96MW1 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.72□□□□□ -3
CCDC43Q96MW1 MIR1254-1-201ENST00000408257 97 ntBASIC-3.74□□□□□ -3.01
CCDC43Q96MW1 RNU6-279P-201ENST00000391297 101 ntBASIC-3.75□□□□□ -3.01
CCDC43Q96MW1 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-3.75□□□□□ -3.01
CCDC43Q96MW1 RNU6-800P-201ENST00000384473 103 ntBASIC-3.76□□□□□ -3.01
CCDC43Q96MW1 AC110620.1-201ENST00000416042 228 ntBASIC-3.76□□□□□ -3.01
CCDC43Q96MW1 RNU6-345P-201ENST00000517001 107 ntBASIC-3.77□□□□□ -3.01
CCDC43Q96MW1 SNX3P1Y-201ENST00000615757 176 ntBASIC-3.77□□□□□ -3.01
CCDC43Q96MW1 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.8□□□□□ -3.02
CCDC43Q96MW1 RNY4P29-201ENST00000410801 97 ntBASIC-3.81□□□□□ -3.02
CCDC43Q96MW1 MIR548X-201ENST00000580069 75 ntBASIC-3.81□□□□□ -3.02
CCDC43Q96MW1 SNORA26.2-201ENST00000390922 122 ntBASIC-3.82□□□□□ -3.02
CCDC43Q96MW1 Y_RNA.388-201ENST00000383919 113 ntBASIC-3.83□□□□□ -3.02
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms